Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 3.4e-225 784.6 390 100.0
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 2.7e-166 589.0 460 70.7
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 5.1e-96 355.5 210 87.6
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 4.2e-90 335.9 459 43.4
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 3.5e-89 332.8 464 42.7
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 1.0e-88 331.3 462 45.0
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 3.0e-88 329.7 479 43.8
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 2.2e-86 323.6 459 43.1
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 2.8e-86 323.2 418 47.4
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 4.8e-86 322.4 463 42.3
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 6.9e-85 318.5 459 42.5
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 7.7e-84 315.1 469 41.4
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 7.7e-84 315.1 464 41.8
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.7e-83 313.9 476 41.4
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 2.9e-83 313.2 458 43.7
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 1.1e-82 311.2 464 41.2
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 4.2e-82 309.3 458 43.4
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 7.2e-82 308.5 428 45.3
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 1.6e-81 307.4 461 41.2
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 1.6e-81 307.4 432 43.3
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 4.6e-81 305.8 458 41.9
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 1.4e-80 304.3 464 42.0
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 3.0e-80 303.1 457 41.8
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 3.0e-80 303.1 455 43.1
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 1.1e-79 301.2 456 43.0
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 2.0e-79 300.4 461 41.4
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 2.5e-79 300.1 461 41.4
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 2.5e-79 300.1 466 40.6
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 3.3e-79 299.7 470 40.0
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 1.3e-78 297.7 485 41.0
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 3.7e-78 296.2 468 40.6
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 8.2e-78 295.0 463 40.0
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 4.1e-77 292.7 459 41.0
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 1.2e-76 291.2 462 40.9
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 3.4e-76 289.7 463 40.8
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 4.5e-76 289.3 463 40.4
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.9e-76 288.9 459 41.6
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.0e-75 288.1 457 41.6
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.7e-75 287.3 471 41.4
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 2.2e-75 287.0 438 42.2
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 2.9e-75 286.6 462 40.0
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 5.0e-75 285.8 459 41.2
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.0e-75 285.8 459 41.2
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.0e-75 285.8 459 41.2
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 1.4e-74 284.3 463 39.7
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.2e-74 283.1 459 40.7
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 4.2e-74 282.7 459 41.0
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 5.5e-74 282.3 437 41.4
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.2e-73 281.2 420 41.7
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 4.7e-73 279.3 462 40.5
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 7.9e-73 278.5 452 39.6
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 1.4e-72 277.7 462 39.0
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 2.3e-72 276.9 439 39.4
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 8.8e-72 275.0 416 40.6
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 2.6e-71 273.5 427 40.3
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 2.6e-71 273.5 469 37.7
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 4.4e-71 272.7 421 42.5
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 4.4e-71 272.7 421 42.5
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 2.2e-70 270.4 439 39.4
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 6.3e-70 268.9 431 40.6
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 1.1e-69 268.1 420 40.0
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.4e-69 267.7 428 40.7
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 1.4e-69 267.7 476 38.2
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 1.8e-69 267.3 432 39.4
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 3.1e-69 266.5 450 40.0
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 3.1e-69 266.5 431 39.2
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 7.0e-69 265.4 436 39.2
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 1.2e-68 264.6 456 38.2
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 1.6e-68 264.2 460 37.6
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 4.5e-68 262.7 452 36.9
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 4.5e-68 262.7 436 39.0
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 1.7e-67 260.8 462 37.9
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 6.5e-67 258.8 431 38.7
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 8.5e-67 258.5 431 40.1
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 1.5e-66 257.7 467 36.0
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 1.5e-66 257.7 456 37.7
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 3.2e-66 256.5 431 40.1
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 3.2e-66 256.5 443 38.1
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 3.2e-66 256.5 431 37.8
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 9.4e-66 255.0 432 38.0
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 9.4e-66 255.0 438 37.9
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 9.4e-66 255.0 430 37.9
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 1.6e-65 254.2 465 36.6
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 2.1e-65 253.8 475 35.4
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 2.1e-65 253.8 436 38.8
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 1.0e-64 251.5 443 39.3
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 1.8e-64 250.8 463 37.4
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 6.7e-64 248.8 461 36.2
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 1.1e-63 248.1 436 38.5
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 1.5e-63 247.7 429 37.8
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 4.4e-63 246.1 429 37.5
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 4.4e-63 246.1 430 37.0
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 7.5e-63 245.4 464 35.3
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-62 243.8 207 66.7
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 4.8e-62 242.7 475 34.3
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 6.3e-62 242.3 493 34.5
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 2.4e-61 240.4 475 34.1
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 3.1e-61 240.0 475 35.4
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 4.1e-61 239.6 473 35.1
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 5.3e-61 239.2 430 35.1
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 9.1e-61 238.4 476 34.9
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 1.2e-60 238.0 440 34.8
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 4.5e-60 236.1 430 37.2
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 3.8e-59 233.0 430 36.7
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.1e-50 204.9 226 47.8
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.1e-50 204.9 416 33.7
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 4.4e-47 193.0 384 35.2
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.7e-47 192.6 440 32.7
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.2e-44 184.9 127 78.7
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 4.7e-41 172.9 127 75.6
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 1.7e-38 164.5 129 72.9
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 2.2e-38 164.1 403 32.5
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 8.6e-35 152.1 161 50.9
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 3.3e-34 150.2 420 30.5
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 6.2e-33 146.0 240 36.2
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.2e-31 141.7 432 29.6
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.1e-29 135.2 260 36.5
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 1.9e-29 134.4 217 41.9
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.6e-28 131.3 136 58.1
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.9e-26 124.4 427 27.6
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 3.3e-26 123.6 186 40.9
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 4.3e-26 123.2 370 28.1
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.3e-26 123.2 185 40.0
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 5.4e-21 106.3 97 55.7
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 2.7e-20 104.0 139 44.6
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.3e-16 90.9 202 32.7
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 3.2e-13 80.5 162 34.0
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 1.9e-10 71.2 190 27.4
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 2.0e-07 61.2 91 41.8


User provided reference genes

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