Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 7.5e-261 903.3 445 100.0
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 7.9e-218 760.4 376 99.2
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.4e-134 483.0 476 56.1
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 2.1e-133 479.9 437 59.3
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 8.9e-129 464.5 476 54.0
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 7.8e-117 424.9 433 52.7
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 6.9e-113 411.8 443 51.0
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 9.0e-113 411.4 439 53.5
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 4.4e-112 409.1 447 51.7
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 8.4e-111 404.8 446 51.8
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 8.4e-111 404.8 446 51.8
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.1e-110 404.4 453 50.8
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 1.9e-110 403.7 441 50.6
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 1.3e-108 397.5 444 49.8
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 6.6e-108 395.2 447 50.3
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 1.9e-107 393.7 457 47.9
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.8e-105 387.1 450 48.0
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 1.4e-102 377.5 371 53.9
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 4.2e-102 375.9 458 46.7
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 3.5e-101 372.9 450 50.0
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 4.6e-101 372.5 444 49.3
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 3.0e-100 369.8 449 48.3
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 5.6e-99 365.5 428 47.0
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 4.8e-98 362.5 441 47.8
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 6.2e-98 362.1 450 45.8
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 3.1e-97 359.8 472 46.4
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.2e-96 357.8 441 46.3
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 2.6e-96 356.7 449 45.4
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 7.6e-96 355.1 442 46.6
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.3e-95 354.4 457 44.6
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 2.9e-95 353.2 408 51.2
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.8e-95 352.8 457 44.4
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 4.9e-95 352.4 457 44.6
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 4.9e-95 352.4 408 51.2
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.5e-95 352.1 458 45.6
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 7.1e-94 348.6 437 45.1
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.2e-93 347.8 508 40.9
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 3.5e-93 346.3 449 45.4
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 6.0e-93 345.5 447 43.6
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 6.0e-93 345.5 440 46.1
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.3e-92 344.4 457 46.4
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.1e-92 342.4 434 45.2
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 8.7e-92 341.7 380 50.8
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 3.3e-91 339.7 425 45.6
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 5.7e-91 339.0 438 43.8
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 5.7e-91 339.0 446 45.7
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 7.4e-91 338.6 445 44.9
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 9.6e-91 338.2 438 44.1
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-90 337.8 442 45.7
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 2.1e-90 337.0 412 47.1
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.8e-90 336.7 439 46.0
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 6.2e-90 335.5 362 48.6
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 8.2e-90 335.1 407 48.4
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.1e-89 334.7 433 44.6
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.8e-89 334.0 452 44.0
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.4e-89 333.6 425 46.4
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 4.0e-89 332.8 396 44.4
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 6.9e-89 332.0 451 43.0
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.2e-88 331.3 445 42.2
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 2.6e-88 330.1 401 46.9
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 4.5e-88 329.3 395 47.6
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 5.8e-88 328.9 375 49.6
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.9e-87 326.6 436 44.0
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 3.8e-87 326.2 453 42.8
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 6.5e-87 325.5 431 43.4
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 8.4e-87 325.1 439 41.2
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 7.1e-86 322.0 449 44.3
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.1e-83 314.7 356 49.4
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.9e-83 313.9 447 41.2
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 2.5e-83 313.5 458 43.7
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.3e-83 313.2 347 49.0
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 4.3e-83 312.8 428 42.8
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 2.2e-82 310.5 432 42.1
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 3.7e-82 309.7 419 44.4
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 4.8e-82 309.3 443 41.5
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 4.1e-81 306.2 439 41.2
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.2e-80 304.7 429 42.0
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 6.5e-79 298.9 308 48.7
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.1e-78 298.1 316 52.8
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.4e-78 297.7 348 46.0
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 9.4e-78 295.0 442 42.8
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.7e-77 293.5 442 42.5
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 2.3e-76 290.4 432 39.8
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 2.4e-73 280.4 322 48.1
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 9.1e-73 278.5 375 45.3
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 2.0e-72 277.3 405 40.2
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 3.4e-72 276.6 420 39.8
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 5.9e-72 275.8 354 41.5
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 1.3e-71 274.6 437 39.8
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 3.8e-71 273.1 443 39.7
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 1.6e-69 267.7 331 46.2
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 1.0e-68 265.0 361 41.8
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 2.8e-66 256.9 307 48.9
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 8.2e-66 255.4 411 41.1
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 5.3e-65 252.7 454 37.4
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 7.0e-65 252.3 334 43.4
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 3.5e-64 250.0 440 39.8
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.1e-62 245.0 315 43.8
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 3.9e-60 236.5 315 40.3
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 6.7e-60 235.7 474 35.7
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 2.6e-59 233.8 390 37.9
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 8.2e-58 228.8 294 41.8
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 4.5e-56 223.0 352 37.8
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 5.9e-56 222.6 352 38.6
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 5.9e-56 222.6 439 38.0
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.0e-55 221.9 343 38.8
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.7e-55 221.1 448 36.2
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 1.0e-52 211.8 318 39.3
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 3.0e-52 210.3 440 36.4
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 2.0e-51 207.6 235 46.4
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 5.7e-51 206.1 236 45.8
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 5.7e-51 206.1 341 37.0
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 3.7e-50 203.4 210 49.0
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 4.8e-50 203.0 282 41.5
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 6.3e-50 202.6 325 37.8
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 3.1e-49 200.3 164 60.4
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 5.4e-49 199.5 366 34.2
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.6e-48 198.0 249 44.2
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 2.7e-48 197.2 308 37.7
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 7.7e-48 195.7 260 41.9
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 7.7e-48 195.7 260 41.9
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.2e-47 194.1 349 36.7
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 8.5e-47 192.2 245 40.8
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 8.5e-47 192.2 235 43.0
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 8.5e-47 192.2 247 41.7
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 8.5e-47 192.2 247 41.7
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 8.5e-47 192.2 247 41.7
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 1.1e-46 191.8 324 37.7
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.4e-44 184.9 185 51.9
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 4.9e-42 176.4 210 44.8
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 7.7e-40 169.1 120 67.5
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 1.5e-38 164.9 258 41.5
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 9.5e-38 162.2 113 68.1
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 8.0e-37 159.1 278 35.3
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.9e-34 149.8 321 32.7
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 2.7e-32 144.1 276 31.9
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 8.6e-31 139.0 286 34.3
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.3e-30 136.7 311 32.8
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 9.8e-27 125.6 473 29.0
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 4.9e-26 123.2 147 44.9
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.4e-26 122.9 147 44.9
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 8.3e-26 122.5 193 38.9
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.2e-25 119.0 147 44.9
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 3.5e-24 117.1 157 42.7
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 4.6e-24 116.7 333 31.2
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 3.9e-23 113.6 153 43.1
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 8.6e-23 112.5 77 61.0
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 4.7e-21 106.7 154 41.6
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 1.1e-20 105.5 263 33.5
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 6.4e-18 96.3 132 40.9
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.9e-17 94.7 180 31.7
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 4.1e-17 93.6 82 54.9
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 7.1e-09 66.2 52 53.8
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 3.5e-08 63.9 84 38.1
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 8.6e-07 59.3 79 36.7
Phvul.001G067001 Phaseolus vulgaris HOM05D004258 ORTHO05D005163 1.1e-06 58.9 97 32.0
SGA_v2.0_scaffold25G11141 Striga asiatica HOM05D004258 ORTHO05D005163 2.5e-06 57.8 102 32.4
Oeu047167.1 Olea europaea HOM05D004258 ORTHO05D005163 3.3e-06 57.4 50 40.0
VMungo0647G1746 Vigna mungo HOM05D004258 ORTHO05D005163 5.6e-06 56.6 99 33.3
ClCG11G008920 Citrullus lanatus HOM05D004258 ORTHO05D005163 7.3e-06 56.2 118 27.1
Lalb_Chr10g0101471 Lupinus albus HOM05D004258 ORTHO05D005163 9.6e-06 55.8 183 27.9


User provided reference genes

Program Settings