Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g20680 Coffea canephora HOM05D003223 ORTHO05D153930 5.6e-83 310.8 152 100.0
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 2.1e-21 106.3 55 92.7
SalBow4G1487 Salvia bowleyana HOM05D003223 ORTHO05D004865 3.4e-19 99.0 55 87.3
SalBow7G2948 Salvia bowleyana HOM05D003223 ORTHO05D004865 3.4e-19 99.0 55 87.3
SGA_v2.0_scaffold2G01007 Striga asiatica HOM05D003223 ORTHO05D004865 4.4e-19 98.6 55 87.3
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 2.8e-18 95.9 55 85.5
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 3.7e-18 95.5 55 83.6
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 4.9e-18 95.1 55 83.6
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 4.9e-18 95.1 55 81.8
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 4.9e-18 95.1 55 81.8
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 1.1e-17 94.0 55 81.8
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 1.8e-17 93.2 55 83.6
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 1.8e-17 93.2 55 81.8
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 1.8e-17 93.2 55 83.6
Oeu024851.1 Olea europaea HOM05D003223 ORTHO05D004865 2.4e-17 92.8 55 80.0
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 2.4e-17 92.8 55 81.8
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 3.1e-17 92.4 55 81.8
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 3.1e-17 92.4 55 83.6
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 3.1e-17 92.4 55 80.0
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 3.1e-17 92.4 55 80.0
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 3.1e-17 92.4 55 80.0
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 3.1e-17 92.4 55 83.6
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 4.1e-17 92.0 55 81.8
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 4.1e-17 92.0 55 81.8
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 4.1e-17 92.0 55 81.8
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 4.1e-17 92.0 55 81.8
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 4.1e-17 92.0 55 81.8
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 4.1e-17 92.0 55 78.2
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 5.4e-17 91.7 55 81.8
C09p07570 Brassica napus HOM05D003223 ORTHO05D004865 5.4e-17 91.7 55 81.8
BolC9t53674H Brassica oleracea HOM05D003223 ORTHO05D004865 5.4e-17 91.7 55 81.8
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 5.4e-17 91.7 55 81.8
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 5.4e-17 91.7 55 80.0
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 1.2e-16 90.5 55 78.2
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 1.2e-16 90.5 55 78.2
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 1.6e-16 90.1 55 80.0
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 2.0e-16 89.7 55 78.2
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 2.0e-16 89.7 55 78.2
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 2.0e-16 89.7 55 80.0
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 2.0e-16 89.7 55 80.0
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 2.0e-16 89.7 55 80.0
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 2.0e-16 89.7 55 80.0
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 2.0e-16 89.7 55 76.4
Hma1.2p1_1945F.1_g308620 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 2.0e-16 89.7 55 76.4
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 2.7e-16 89.4 55 78.2
Actinidia28935 Actinidia chinensis HOM05D003223 ORTHO05D004865 3.5e-16 89.0 55 80.0
BcaB04g19855 Brassica carinata HOM05D003223 ORTHO05D002974 3.5e-16 89.0 55 80.0
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 3.5e-16 89.0 55 78.2
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 3.5e-16 89.0 55 78.2
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 3.5e-16 89.0 55 78.2
GSVIVG01000234001 Vitis vinifera HOM05D003223 ORTHO05D004865 3.5e-16 89.0 55 78.2
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 4.5e-16 88.6 55 78.2
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 4.5e-16 88.6 55 78.2
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 5.9e-16 88.2 55 78.2
CiPaw.15G184200 Carya illinoinensis HOM05D003223 ORTHO05D004865 7.8e-16 87.8 55 78.2
Actinidia26635 Actinidia chinensis HOM05D003223 ORTHO05D004865 1.0e-15 87.4 55 76.4
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 1.0e-15 87.4 55 76.4
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 1.0e-15 87.4 55 76.4
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 1.3e-15 87.0 55 74.5
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 2.3e-15 86.3 55 74.5
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 2.3e-15 86.3 55 76.4
Cpa.g.sc170.64 Carica papaya HOM05D003223 ORTHO05D014735 2.9e-15 85.9 61 70.5
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 2.9e-15 85.9 55 76.4
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 3.8e-15 85.5 55 76.4
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 3.8e-15 85.5 55 76.4
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 3.8e-15 85.5 55 76.4
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 3.8e-15 85.5 55 74.5
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 3.8e-15 85.5 55 70.9
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 5.0e-15 85.1 55 74.5
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 5.0e-15 85.1 55 74.5
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 5.0e-15 85.1 55 74.5
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 5.0e-15 85.1 55 74.5
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 5.0e-15 85.1 55 74.5
TPR.G7796 Trifolium pratense HOM05D003223 ORTHO05D004865 5.0e-15 85.1 55 74.5
vmacro14224 Vaccinium macrocarpon HOM05D002030 ORTHO05D004391 5.0e-15 85.1 55 78.2
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 8.6e-15 84.3 55 72.7
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 8.6e-15 84.3 55 74.5
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 8.6e-15 84.3 55 74.5
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 8.6e-15 84.3 55 74.5
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 8.6e-15 84.3 55 74.5
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.1e-14 84.0 55 72.7
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 1.1e-14 84.0 55 74.5
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 1.5e-14 83.6 55 74.5
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 1.5e-14 83.6 55 74.5
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 1.5e-14 83.6 55 74.5
TAR636G0043 Trochodendron aralioides HOM05D003223 ORTHO05D004865 1.5e-14 83.6 55 72.7
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 1.9e-14 83.2 55 74.5
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 2.5e-14 82.8 55 72.7
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 3.3e-14 82.4 55 72.7
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 4.3e-14 82.0 55 74.5
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 4.3e-14 82.0 55 72.7
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 5.6e-14 81.6 55 69.1
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 5.6e-14 81.6 55 70.9
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 5.6e-14 81.6 55 70.9
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 7.3e-14 81.3 55 72.7
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 7.3e-14 81.3 55 72.7
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 7.3e-14 81.3 55 72.7
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 9.5e-14 80.9 55 72.7
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 9.5e-14 80.9 55 70.9
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 1.2e-13 80.5 55 74.5
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 1.2e-13 80.5 55 70.9
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 1.6e-13 80.1 55 67.3
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 1.6e-13 80.1 55 70.9
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 1.6e-13 80.1 55 70.9
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 2.1e-13 79.7 55 69.1
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 2.1e-13 79.7 55 70.9
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 2.1e-13 79.7 55 69.1
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 2.1e-13 79.7 55 70.9
VMungo1309G2105 Vigna mungo HOM05D003223 ORTHO05D004865 2.1e-13 79.7 55 70.9
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 2.8e-13 79.3 55 65.5
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 2.8e-13 79.3 55 70.9
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 2.8e-13 79.3 55 70.9
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 3.6e-13 79.0 55 69.1
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 3.6e-13 79.0 55 69.1
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 3.6e-13 79.0 55 70.9
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 3.6e-13 79.0 55 70.9
ATR0064G028 Amborella trichopoda HOM05D003223 ORTHO05D004865 6.1e-13 78.2 55 67.3
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 8.0e-13 77.8 55 70.9
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 8.0e-13 77.8 55 70.9
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 8.0e-13 77.8 55 70.9
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 8.0e-13 77.8 55 70.9
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 8.0e-13 77.8 55 70.9
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 6.8e-12 74.7 55 63.6
SEGI_29105 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 8.9e-12 74.3 55 65.5
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 4.4e-11 72.0 55 61.8
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 1.3e-10 70.5 55 58.2
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 3.7e-10 68.9 55 63.6
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 3.7e-10 68.9 56 60.7
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 6.4e-10 68.2 55 58.2
vmacro16040 Vaccinium macrocarpon HOM05D001671 ORTHO05D426517 1.4e-09 67.0 43 81.4
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 3.2e-09 65.9 55 58.2
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 7.8e-08 61.2 55 56.4


User provided reference genes

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