Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.8e-196 689.1 350 100.0
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.1e-163 580.1 350 80.3
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 4.1e-161 571.6 325 82.5
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 5.3e-161 571.2 327 85.0
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 5.9e-160 567.8 332 81.9
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 5.0e-159 564.7 330 81.5
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 6.5e-159 564.3 330 81.8
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 1.1e-158 563.5 327 82.0
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 3.2e-158 562.0 325 82.2
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 4.2e-158 561.6 331 81.3
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 4.2e-158 561.6 355 78.6
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 7.2e-158 560.8 332 81.9
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 7.2e-158 560.8 332 81.3
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 1.6e-157 559.7 322 82.3
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 2.1e-157 559.3 333 80.8
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 2.7e-157 558.9 333 81.4
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 3.6e-157 558.5 320 83.1
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.6e-157 558.5 333 81.4
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 3.6e-157 558.5 326 81.9
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 8.0e-157 557.4 347 80.4
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.0e-156 557.0 324 83.0
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 5.2e-156 554.7 332 79.8
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 6.7e-156 554.3 321 82.6
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 1.1e-155 553.5 342 78.7
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.6e-155 552.4 336 80.4
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.6e-155 552.4 336 80.4
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 3.3e-155 552.0 328 81.1
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 4.4e-155 551.6 327 80.7
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 4.4e-155 551.6 320 81.6
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 9.7e-155 550.4 323 82.7
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 1.3e-154 550.1 336 80.1
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.7e-154 549.7 332 79.8
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 2.2e-154 549.3 319 82.1
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.8e-154 548.9 336 79.8
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 3.7e-154 548.5 323 81.7
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 4.8e-154 548.1 321 81.3
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 1.1e-153 547.0 321 81.0
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.4e-153 546.6 332 79.2
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.8e-153 546.2 336 79.8
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 2.4e-153 545.8 322 80.1
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 3.1e-153 545.4 322 81.4
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 4.1e-153 545.0 324 79.3
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 5.3e-153 544.7 326 81.3
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 5.3e-153 544.7 335 79.7
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 7.0e-153 544.3 337 78.0
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 1.2e-152 543.5 326 80.7
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 2.0e-152 542.7 352 74.7
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 2.6e-152 542.3 317 81.1
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 2.6e-152 542.3 329 79.3
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 3.5e-152 542.0 333 78.4
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 3.5e-152 542.0 321 80.4
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 4.5e-152 541.6 333 78.7
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 5.9e-152 541.2 319 82.1
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 7.7e-152 540.8 322 80.1
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 7.7e-152 540.8 322 80.1
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.3e-151 540.0 321 81.6
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 3.8e-151 538.5 332 77.1
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 6.5e-151 537.7 334 77.5
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.9e-150 536.2 333 76.9
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 3.2e-150 535.4 359 74.1
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 5.5e-150 534.6 347 74.6
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 5.5e-150 534.6 318 80.2
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 7.2e-150 534.3 328 79.3
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.6e-149 533.1 318 79.6
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 1.6e-149 533.1 321 80.7
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 8.0e-149 530.8 321 77.6
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.4e-148 530.0 330 76.1
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.8e-148 529.6 322 78.3
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 2.3e-148 529.3 327 77.7
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 2.3e-148 529.3 318 79.2
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 3.0e-148 528.9 318 78.9
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 5.2e-148 528.1 321 77.9
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 2.6e-147 525.8 332 77.1
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 4.4e-147 525.0 327 78.3
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 4.1e-145 518.5 325 76.6
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 7.0e-145 517.7 340 73.5
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 9.1e-145 517.3 323 77.1
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 2.7e-144 515.8 322 76.1
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 2.7e-144 515.8 322 76.7
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.0e-143 513.8 321 75.1
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 1.3e-143 513.5 327 76.8
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 5.0e-143 511.5 322 76.1
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.9e-142 509.6 289 84.8
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 1.9e-142 509.6 346 71.1
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 2.5e-142 509.2 322 75.8
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 5.5e-142 508.1 324 75.6
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 1.2e-141 506.9 323 76.2
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 1.2e-141 506.9 323 76.2
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 8.0e-141 504.2 344 72.1
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 1.8e-140 503.1 320 76.2
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.3e-140 502.7 323 75.9
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 9.8e-139 497.3 289 83.4
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.8e-137 493.0 306 78.1
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 9.1e-137 490.7 321 74.1
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 3.5e-136 488.8 307 77.5
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 5.5e-134 481.5 355 67.0
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 1.5e-131 473.4 289 78.5
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 1.3e-130 470.3 290 77.2
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 5.9e-128 461.5 343 68.2
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 7.8e-128 461.1 352 66.8
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 5.0e-127 458.4 255 84.3
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 6.6e-127 458.0 320 72.8
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.4e-124 450.3 267 80.1
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 6.8e-124 448.0 267 79.8
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 1.0e-119 434.1 272 76.8
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 3.0e-119 432.6 267 77.5
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 5.2e-116 421.8 267 75.3
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 4.7e-109 398.7 233 81.5
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.3e-106 390.6 328 58.5
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 3.7e-106 389.0 325 58.5
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 6.4e-106 388.3 227 81.5
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 9.5e-102 374.4 328 57.0
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 1.5e-83 313.9 302 53.3
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 2.1e-80 303.5 167 84.4
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.1e-77 293.5 213 63.8
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 2.8e-77 293.1 275 59.6
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 9.3e-73 278.1 175 75.4
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 5.5e-65 252.3 207 62.3
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 1.9e-62 243.8 144 81.2
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 1.2e-56 224.6 206 58.3
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 1.7e-53 214.2 323 38.1
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.2e-51 208.0 248 47.2
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 6.5e-50 202.2 315 43.2
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.2e-48 198.0 196 55.6
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 3.7e-45 186.4 409 32.0
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 7.2e-41 172.2 106 74.5
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 2.1e-40 170.6 114 74.6
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 1.7e-34 151.0 236 44.1
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 3.2e-33 146.7 320 34.4
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.1e-20 105.1 57 86.0
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 5.4e-20 102.8 250 34.8
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 3.8e-18 96.7 98 54.1
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 5.2e-15 86.3 78 59.0
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 8.9e-15 85.5 45 84.4
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 1.1e-09 68.6 55 58.2
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 3.6e-08 63.5 30 90.0
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.4e-07 61.6 41 73.2
Nitab4.5_0016721g0010 Nicotiana tabacum HOM05D002908 ORTHO05D283189 9.8e-06 55.5 55 61.8


User provided reference genes

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