Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 0.0e+00 1325.5 675 100.0
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 0.0e+00 1081.6 697 80.3
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 0.0e+00 1077.4 691 80.2
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 2.3e-309 1065.1 674 80.6
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 9.1e-306 1053.1 677 79.3
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 2.2e-304 1048.5 680 79.1
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 3.8e-304 1047.7 677 79.6
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 2.3e-301 1038.5 678 78.2
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 2.3e-301 1038.5 672 78.4
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 8.8e-301 1036.6 675 78.7
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.3e-299 1032.7 680 78.4
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 2.2e-299 1031.9 677 77.4
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 8.3e-299 1030.0 673 78.6
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 8.3e-299 1030.0 679 77.8
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 2.5e-295 1018.5 672 77.7
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 2.9e-291 1005.0 677 75.0
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 1.1e-290 1003.0 677 76.2
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 6.6e-288 993.8 729 73.1
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 8.6e-288 993.4 678 74.5
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 3.3e-287 991.5 676 74.7
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 7.3e-287 990.3 686 74.6
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 7.3e-287 990.3 686 74.6
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 7.3e-287 990.3 676 75.0
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 5.8e-284 980.7 674 74.0
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 7.5e-284 980.3 675 74.4
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.7e-283 979.2 680 73.2
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 2.2e-283 978.8 665 74.4
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 2.0e-281 972.2 681 75.2
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.8e-281 970.3 677 72.7
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 7.8e-281 970.3 677 72.7
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 3.9e-280 968.0 666 75.2
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 6.6e-280 967.2 688 72.2
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.3e-279 963.8 679 72.6
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 2.8e-278 961.8 676 73.2
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 4.7e-278 961.1 705 70.9
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 4.7e-278 961.1 672 73.1
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 3.1e-277 958.4 678 72.7
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 8.3e-275 950.3 678 70.5
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 5.4e-274 947.6 689 71.3
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 2.1e-273 945.7 674 70.9
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 4.6e-273 944.5 673 72.8
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 1.7e-272 942.6 645 75.5
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.3e-272 942.2 680 70.9
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 3.0e-272 941.8 682 70.4
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 6.6e-272 940.6 682 70.7
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 3.6e-270 934.9 675 71.4
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 2.3e-269 932.2 666 71.0
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 4.0e-269 931.4 685 72.0
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 1.2e-268 929.9 672 71.4
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 3.4e-268 928.3 679 69.2
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 4.9e-267 924.5 652 72.9
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 4.9e-267 924.5 674 70.0
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 6.4e-267 924.1 680 69.7
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.4e-266 922.9 681 70.8
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 4.1e-266 921.4 681 70.5
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 2.1e-265 919.1 678 69.2
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.7e-265 918.7 656 70.6
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 4.6e-265 917.9 679 68.5
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 1.7e-264 916.0 678 69.0
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 3.0e-264 915.2 678 71.7
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 8.1e-262 907.1 675 69.8
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 1.1e-261 906.7 679 68.5
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 1.4e-261 906.4 684 69.6
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 4.0e-261 904.8 681 68.1
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.6e-260 902.1 725 66.2
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 4.9e-259 897.9 679 68.0
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 8.4e-259 897.1 1002 52.8
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 2.3e-256 889.0 672 67.0
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 2.6e-252 875.5 712 64.7
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 3.4e-252 875.2 712 64.5
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 1.4e-250 869.8 679 66.7
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 6.0e-249 864.4 685 67.0
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 1.3e-248 863.2 585 73.7
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 4.5e-244 848.2 684 66.4
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 3.8e-243 845.1 687 66.5
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 9.3e-242 840.5 678 65.8
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 7.9e-241 837.4 680 66.0
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.0e-240 837.0 682 65.8
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 3.0e-240 835.5 682 65.1
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 3.9e-240 835.1 686 65.7
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 6.7e-240 834.3 682 65.5
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 1.6e-238 829.7 684 64.9
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 3.1e-237 825.5 686 65.3
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 4.0e-237 825.1 686 65.3
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 1.1e-234 817.0 507 79.1
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.8e-229 799.7 678 61.5
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 2.0e-228 796.2 688 63.4
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 7.6e-228 794.3 686 63.3
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 7.6e-228 794.3 686 63.3
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.3e-227 793.5 688 63.2
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.6e-222 776.5 672 62.6
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 4.1e-221 771.9 712 60.8
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 3.4e-212 742.3 685 60.0
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 3.4e-212 742.3 448 80.4
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 2.5e-210 736.1 700 54.6
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 2.7e-209 732.6 707 55.3
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.5e-207 726.9 679 56.4
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 2.2e-206 723.0 531 69.9
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 7.0e-205 718.0 537 69.1
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 7.0e-205 718.0 823 50.7
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 8.8e-200 701.0 669 55.2
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 8.2e-198 694.5 438 78.5
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 2.7e-196 689.5 656 57.0
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 3.8e-195 685.6 678 57.5
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 5.7e-183 645.2 428 70.8
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 8.0e-169 598.2 692 47.4
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 3.0e-163 579.7 532 58.1
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 6.2e-161 572.0 578 56.2
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 2.9e-150 536.6 680 44.3
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 2.4e-149 533.5 550 56.0
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 4.9e-142 509.2 709 40.6
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 4.6e-132 476.1 438 60.0
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.7e-124 450.3 407 63.4
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 5.3e-120 436.0 435 54.0
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 2.6e-119 433.7 537 43.6
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 3.8e-102 376.7 426 50.9
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 7.2e-101 372.5 300 64.7
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-93 347.8 371 53.6
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 3.9e-91 340.1 657 37.4
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 6.3e-89 332.8 304 57.2
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 7.0e-88 329.3 218 75.7
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 9.1e-88 328.9 610 35.9
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 6.3e-81 306.2 359 54.3
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 2.5e-77 294.3 258 67.4
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 1.7e-70 271.6 261 61.7
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-67 261.5 239 56.9
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 2.3e-67 261.2 257 58.0
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 4.0e-67 260.4 259 61.0
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 9.8e-66 255.8 266 54.5
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 6.3e-65 253.1 259 59.5
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 7.5e-58 229.6 131 84.0
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 6.4e-57 226.5 206 56.3
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 1.6e-55 221.9 233 59.7
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 2.7e-55 221.1 142 79.6
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.6e-47 195.3 107 84.1
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 1.3e-41 175.6 115 75.7
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 4.1e-40 170.6 102 80.4
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-39 169.1 102 79.4
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 2.7e-39 167.9 145 61.4
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 4.6e-39 167.2 117 67.5
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-36 158.7 174 48.9
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 8.1e-36 156.4 89 82.0
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 8.1e-36 156.4 89 82.0
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 8.1e-36 156.4 89 82.0
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 8.1e-36 156.4 165 58.8
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.1e-35 156.0 103 76.7
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 6.8e-35 153.3 107 65.4
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-34 152.5 245 38.8
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.5e-34 152.1 85 82.4
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 3.4e-34 151.0 116 67.2
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 7.6e-34 149.8 207 45.9
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 7.1e-32 143.3 79 83.5
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 7.1e-32 143.3 79 84.8
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.7e-30 138.7 105 64.8
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 2.3e-30 138.3 207 39.6
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 6.2e-28 130.2 70 77.1
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 4.9e-25 120.6 65 73.8
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-22 112.8 185 44.3
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-20 105.5 103 57.3
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 8.1e-20 103.2 56 80.4
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 1.4e-19 102.4 56 78.6
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.8e-19 102.1 124 47.6
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 3.1e-19 101.3 56 76.8
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 5.3e-19 100.5 97 52.6
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-18 99.4 62 74.2
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 1.5e-18 99.0 103 56.3
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 5.8e-18 97.1 62 74.2
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-17 95.5 70 64.3
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 3.8e-17 94.4 98 49.0
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 3.8e-17 94.4 78 62.8
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 8.4e-17 93.2 127 42.5
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 1.9e-16 92.0 55 70.9
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 3.9e-14 84.3 50 80.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 3.9e-14 84.3 50 80.0
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 2.5e-13 81.6 46 80.4
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 2.5e-13 81.6 63 65.1
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-13 81.3 63 65.1
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 4.3e-13 80.9 47 78.7
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-12 78.6 174 41.4
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 3.7e-12 77.8 202 38.6
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 8.1e-12 76.6 207 36.7
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 4.0e-11 74.3 78 52.6
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 1.7e-09 68.9 143 33.6
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 2.9e-09 68.2 39 71.8
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-08 66.2 71 64.8
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 2.1e-07 62.0 36 69.4
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 2.7e-07 61.6 95 49.5
Thecc.05G138200 Theobroma cacao HOM05D002722 ORTHO05D003076 3.5e-07 61.2 64 54.7
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 7.9e-07 60.1 91 44.0


User provided reference genes

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