Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g19010 Coffea canephora HOM05D002935 ORTHO05D000079 4.2e-74 281.2 134 100.0
Cc07_g09570 Coffea canephora HOM05D002935 ORTHO05D000079 2.6e-39 165.6 95 86.3
Nitab4.5_0000178g0100 Nicotiana tabacum HOM05D002935 ORTHO05D000079 1.7e-19 99.8 123 55.3
CSS0011225 Camellia sinensis var. sinensis HOM05D002935 ORTHO05D000079 3.9e-19 98.6 110 59.1
Cfa004312 Carpinus fangiana HOM05D002935 ORTHO05D000079 5.1e-19 98.2 99 58.6
Nitab4.5_0009263g0010 Nicotiana tabacum HOM05D002935 ORTHO05D000079 8.6e-19 97.4 123 54.5
CiPaw.02G018300 Carya illinoinensis HOM05D002935 ORTHO05D000079 1.1e-18 97.1 111 55.0
Sabra07G0021600 Salix brachista HOM05D002935 ORTHO05D000079 1.9e-18 96.3 113 53.1
QL06p046258 Quercus lobata HOM05D002935 ORTHO05D000079 4.3e-18 95.1 111 54.1
Manes.01G135900 Manihot esculenta HOM05D002935 ORTHO05D000079 9.5e-18 94.0 114 51.8
Potri.007G024500 Populus trichocarpa HOM05D002935 ORTHO05D000079 1.2e-17 93.6 113 51.3
GSVIVG01018951001 Vitis vinifera HOM05D002935 ORTHO05D000079 1.2e-17 93.6 96 58.3
Manes.02G094300 Manihot esculenta HOM05D002935 ORTHO05D000079 2.8e-17 92.4 114 51.8
COL.COLO4_22071 Corchorus olitorius HOM05D002935 ORTHO05D000079 3.6e-17 92.0 125 48.8
Thecc.01G034600 Theobroma cacao HOM05D002935 ORTHO05D000079 3.6e-17 92.0 114 49.1
TWI09G1027 Tripterygium wilfordii HOM05D002935 ORTHO05D000079 3.6e-17 92.0 115 53.0
Lalb_Chr16g0377801 Lupinus albus HOM05D002935 ORTHO05D000079 6.2e-17 91.3 122 48.4
MD02G1146800 Malus domestica HOM05D002935 ORTHO05D000079 1.1e-16 90.5 130 48.5
Potri.005G122700 Populus trichocarpa HOM05D002935 ORTHO05D000079 1.1e-16 90.5 119 50.4
Cpa.g.sc6.118 Carica papaya HOM05D002935 ORTHO05D000079 1.4e-16 90.1 122 48.4
Lj2g0005931 Lotus japonicus HOM05D002935 ORTHO05D000079 1.8e-16 89.7 114 46.5
CiPaw.01G039700 Carya illinoinensis HOM05D002935 ORTHO05D000079 3.1e-16 89.0 111 50.5
Glyma.11G068700 Glycine max HOM05D002935 ORTHO05D000079 3.1e-16 89.0 121 43.8
Lalb_Chr09g0322361 Lupinus albus HOM05D002935 ORTHO05D000079 8.9e-16 87.4 119 45.4
Duzib264G0021 Durio zibethinus HOM05D002935 ORTHO05D000079 1.2e-15 87.0 118 49.2
MD15G1260900 Malus domestica HOM05D002935 ORTHO05D000079 1.2e-15 87.0 130 47.7
Duzib147G0090 Durio zibethinus HOM05D002935 ORTHO05D000079 2.0e-15 86.3 119 49.6
Hma1.2p1_0224F.1_g094591 Hydrangea macrophylla HOM05D002935 ORTHO05D000079 2.6e-15 85.9 113 51.3
Hma1.2p1_0224F.1_g094610 Hydrangea macrophylla HOM05D002935 ORTHO05D000079 2.6e-15 85.9 113 51.3
Peaxi162Scf00366g00123 Petunia axillaris HOM05D002935 ORTHO05D000079 2.6e-15 85.9 112 56.2
Sabra05G0100800 Salix brachista HOM05D002935 ORTHO05D000079 2.6e-15 85.9 119 49.6
PGSC0003DMG400015502 Solanum tuberosum HOM05D002935 ORTHO05D000079 2.6e-15 85.9 117 49.6
arahy.Tifrunner.gnm1.ann1.3J6WSK Arachis hypogaea HOM05D002935 ORTHO05D000079 4.4e-15 85.1 107 48.6
arahy.Tifrunner.gnm1.ann1.TF5DD7 Arachis hypogaea HOM05D002935 ORTHO05D000079 4.4e-15 85.1 107 48.6
FAN23G0400 Fragaria x ananassa HOM05D002935 ORTHO05D000079 7.6e-15 84.3 113 46.0
Lj4A202G40 Lonicera japonica HOM05D002935 ORTHO05D000079 1.3e-14 83.6 92 57.6
FAN19G1680 Fragaria x ananassa HOM05D002935 ORTHO05D000079 1.7e-14 83.2 113 45.1
Oeu033647.1 Olea europaea HOM05D002935 ORTHO05D000079 1.7e-14 83.2 111 52.3
Phvul.002G030800 Phaseolus vulgaris HOM05D002935 ORTHO05D000079 1.7e-14 83.2 107 47.7
Atru.chr3.584 Acer truncatum HOM05D002935 ORTHO05D000079 2.2e-14 82.8 111 48.6
Duzib187G1642 Durio zibethinus HOM05D002935 ORTHO05D000079 2.9e-14 82.4 120 47.5
Gohir.A12G064700 Gossypium hirsutum HOM05D002935 ORTHO05D000079 4.9e-14 81.6 119 48.7
FvH4_1g13230 Fragaria vesca HOM05D002935 ORTHO05D000079 6.4e-14 81.3 113 44.2
TAR628G1192 Trochodendron aralioides HOM05D002935 ORTHO05D000079 6.4e-14 81.3 111 51.4
DCAR_025944 Daucus carota HOM05D002935 ORTHO05D000079 1.9e-13 79.7 115 45.2
Nitab4.5_0000136g0370 Nicotiana tabacum HOM05D002935 ORTHO05D000079 1.9e-13 79.7 125 44.8
TAR381G0635 Trochodendron aralioides HOM05D002935 ORTHO05D000079 1.9e-13 79.7 114 46.5
Prupe.7G155400 Prunus persica HOM05D002935 ORTHO05D000079 2.4e-13 79.3 131 42.7
RcHm_v2.0_Chr2g0101421 Rosa chinensis HOM05D002935 ORTHO05D000079 3.2e-13 79.0 105 45.7
FAN28G0047 Fragaria x ananassa HOM05D002935 ORTHO05D000079 4.1e-13 78.6 113 44.2
Rhsim10G0116700 Rhododendron simsii HOM05D002935 ORTHO05D000079 4.1e-13 78.6 93 49.5
Phvul.003G253900 Phaseolus vulgaris HOM05D002935 ORTHO05D000079 7.1e-13 77.8 112 44.6
SalBow5G2862 Salvia bowleyana HOM05D002935 ORTHO05D000079 7.1e-13 77.8 109 52.3
Oeu042267.1 Olea europaea HOM05D002935 ORTHO05D000079 9.2e-13 77.4 114 48.2
Gohir.D11G190500 Gossypium hirsutum HOM05D002935 ORTHO05D000079 1.2e-12 77.0 115 46.1
Lalb_Chr05g0212781 Lupinus albus HOM05D002935 ORTHO05D000079 1.2e-12 77.0 121 41.3
Nn1g04972 Nelumbo nucifera HOM05D002935 ORTHO05D000079 1.2e-12 77.0 118 47.5
Psat2g159120 Pisum sativum HOM05D002935 ORTHO05D000079 2.1e-12 76.3 108 45.4
CAN.G53.34 Capsicum annuum HOM05D002935 ORTHO05D000079 2.7e-12 75.9 122 43.4
VMungo0251G2949 Vigna mungo HOM05D002935 ORTHO05D000079 2.7e-12 75.9 112 43.8
MSTRG.15271 Avicennia marina HOM05D002935 ORTHO05D000079 3.5e-12 75.5 83 59.0
CAN.G358.81 Capsicum annuum HOM05D002935 ORTHO05D000079 4.6e-12 75.1 129 48.1
ClCG01G019610 Citrullus lanatus HOM05D002935 ORTHO05D000079 7.8e-12 74.3 87 50.6
Nitab4.5_0005358g0010 Nicotiana tabacum HOM05D002935 ORTHO05D000079 7.8e-12 74.3 125 42.4
Gohir.A11G184000 Gossypium hirsutum HOM05D002935 ORTHO05D000079 1.0e-11 73.9 115 45.2
Nn5g29627 Nelumbo nucifera HOM05D002935 ORTHO05D000079 1.0e-11 73.9 118 46.6
Peaxi162Scf00008g03610 Petunia axillaris HOM05D002935 ORTHO05D000079 1.0e-11 73.9 116 50.0
Actinidia19189 Actinidia chinensis HOM05D002935 ORTHO05D000079 1.7e-11 73.2 106 47.2
CANSAT01G0662 Cannabis sativa HOM05D002935 ORTHO05D000079 3.0e-11 72.4 123 40.7
Solyc02g062760.4 Solanum lycopersicum HOM05D002935 ORTHO05D000079 3.0e-11 72.4 99 46.5
CsaV3_6G046280 Cucumis sativus L. HOM05D002935 ORTHO05D000079 3.9e-11 72.0 111 42.3
Gohir.D03G014000 Gossypium hirsutum HOM05D002935 ORTHO05D000079 3.9e-11 72.0 101 47.5
TPR.G22280 Trifolium pratense HOM05D002935 ORTHO05D000079 3.9e-11 72.0 108 45.4
MELO3C007831.2 Cucumis melo HOM05D002935 ORTHO05D000079 5.1e-11 71.6 111 41.4
Glyma.02G056600 Glycine max HOM05D002935 ORTHO05D000079 5.1e-11 71.6 97 45.4
Lsat_1_v5_gn_3_76460 Lactuca sativa HOM05D002935 ORTHO05D000079 5.1e-11 71.6 100 45.0
Medtr5g020230 Medicago truncatula HOM05D002935 ORTHO05D000079 5.1e-11 71.6 109 42.2
Gorai.003G014300 Gossypium raimondii HOM05D002935 ORTHO05D000079 6.6e-11 71.2 101 46.5
Gorai.007G202900 Gossypium raimondii HOM05D002935 ORTHO05D000079 6.6e-11 71.2 116 45.7
Lsat_1_v5_gn_2_76320 Lactuca sativa HOM05D002935 ORTHO05D000079 1.1e-10 70.5 101 46.5
Ciclev10026328m.g Citrus clementina HOM05D002935 ORTHO05D000079 1.5e-10 70.1 114 44.7
Gohir.A02G166000 Gossypium hirsutum HOM05D002935 ORTHO05D000079 1.5e-10 70.1 115 42.6
Sed0015276 Sechium edule HOM05D002935 ORTHO05D000079 1.9e-10 69.7 112 41.1
Glyma.16G139400 Glycine max HOM05D002935 ORTHO05D000079 2.5e-10 69.3 98 49.0
Sopen02g029890 Solanum pennellii HOM05D002935 ORTHO05D000079 1.2e-09 67.0 117 41.0
HanXRQChr14g0441171 Helianthus annuus HOM05D002935 ORTHO05D000079 1.6e-09 66.6 106 42.5
LjContig00448g0012850 Lotus japonicus HOM05D002935 ORTHO05D000079 1.6e-09 66.6 117 41.0
Solyc02g085190.2 Solanum lycopersicum HOM05D002935 ORTHO05D000079 2.1e-09 66.2 123 43.1
Sopen02g013790 Solanum pennellii HOM05D002935 ORTHO05D000079 2.1e-09 66.2 95 46.3
Gohir.D12G064700 Gossypium hirsutum HOM05D002935 ORTHO05D000079 3.6e-09 65.5 99 50.5
Gorai.008G067800 Gossypium raimondii HOM05D002935 ORTHO05D000079 3.6e-09 65.5 99 50.5
ECA238G2790 Erigeron canadensis HOM05D002935 ORTHO05D000079 8.1e-09 64.3 98 48.0
Ca_22272_v3 Cicer arietinum L. HOM05D002935 ORTHO05D000079 1.1e-08 63.9 109 37.6
Ca_22285_v3 Cicer arietinum L. HOM05D002935 ORTHO05D000079 1.1e-08 63.9 109 37.6
Sed0016428 Sechium edule HOM05D002935 ORTHO05D000079 1.1e-08 63.9 106 39.6
Actinidia35635 Actinidia chinensis HOM05D002935 ORTHO05D000079 3.1e-08 62.4 112 42.0
Sc16g0002720 Simmondsia chinensis HOM05D002935 ORTHO05D000079 3.1e-08 62.4 82 47.6
HanXRQChr07g0192871 Helianthus annuus HOM05D002935 ORTHO05D000079 1.2e-07 60.5 99 46.5
VMungo1215G2595 Vigna mungo HOM05D002935 ORTHO05D000079 1.2e-07 60.5 88 48.9
PGSC0003DMG400003508 Solanum tuberosum HOM05D002935 ORTHO05D000079 1.5e-07 60.1 129 38.8
Medtr8g077510 Medicago truncatula HOM05D002935 ORTHO05D000079 2.6e-07 59.3 105 40.0
Sed0004737 Sechium edule HOM05D002935 ORTHO05D000079 7.6e-07 57.8 80 46.2
Ah.03g140920 Amaranthus hybridus HOM05D002935 ORTHO05D000079 1.7e-06 56.6 61 59.0
MBI10_g41093_MAGBIO Magnolia biondii HOM05D002935 ORTHO05D000079 1.7e-06 56.6 110 42.7
CsaV3_4G005580 Cucumis sativus L. HOM05D002935 ORTHO05D000079 4.9e-06 55.1 84 41.7
PGR102G2913 Punica granatum HOM05D002935 ORTHO05D000079 4.9e-06 55.1 119 39.5
SHI22859 Sapria himalayana HOM05D002935 ORTHO05D000079 4.9e-06 55.1 103 42.7
Ah.02g125160 Amaranthus hybridus HOM05D002935 ORTHO05D000079 8.4e-06 54.3 95 41.1
EL10Ac6g15556 Beta vulgaris HOM05D002935 ORTHO05D000079 8.4e-06 54.3 136 39.0
ClCG07G008580 Citrullus lanatus HOM05D002935 ORTHO05D000079 8.4e-06 54.3 89 40.4
Glyma.08G142500 Glycine max HOM05D002935 ORTHO05D000079 8.4e-06 54.3 81 44.4
SGA_v2.0_scaffold78G25408 Striga asiatica HOM05D002935 ORTHO05D000079 8.4e-06 54.3 64 54.7


User provided reference genes

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