Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 1.4e-82 309.7 173 100.0
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 6.1e-41 171.4 121 81.0
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.0e-32 144.1 148 65.5
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 3.3e-31 139.0 178 47.8
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 5.7e-31 138.3 146 59.6
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 7.4e-31 137.9 178 54.5
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.7e-30 136.7 146 60.3
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 1.7e-30 136.7 178 49.4
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.7e-30 136.7 146 60.3
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.7e-30 136.7 178 53.9
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 1.7e-30 136.7 178 53.9
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 2.2e-30 136.3 125 68.8
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 2.8e-30 136.0 178 53.9
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 3.7e-30 135.6 178 53.4
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 3.7e-30 135.6 178 53.9
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 4.8e-30 135.2 178 57.3
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 4.8e-30 135.2 146 59.6
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.1e-29 134.0 146 58.9
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.8e-29 133.3 148 66.2
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 4.1e-29 132.1 130 66.2
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 5.3e-29 131.7 130 66.9
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 5.3e-29 131.7 130 73.1
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.2e-28 130.6 130 67.7
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 7.7e-28 127.9 151 57.0
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 2.2e-27 126.3 130 68.5
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.2e-27 126.3 130 68.5
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.9e-27 125.9 125 67.2
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.9e-27 125.9 186 48.4
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 2.9e-27 125.9 130 68.5
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 3.8e-27 125.6 130 68.5
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.1e-26 124.0 130 67.7
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.5e-26 123.6 130 68.5
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.5e-26 123.6 130 66.9
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.5e-26 122.9 130 67.7
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 2.5e-26 122.9 178 55.6
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 3.2e-26 122.5 117 58.1
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 5.5e-26 121.7 130 67.7
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 5.5e-26 121.7 164 46.3
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 5.5e-26 121.7 125 70.4
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.2e-25 120.6 130 67.7
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 2.7e-25 119.4 146 61.6
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.7e-25 119.4 148 60.8
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 3.6e-25 119.0 130 63.8
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 6.1e-25 118.2 148 60.8
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 8.0e-25 117.9 130 66.2
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 1.0e-24 117.5 178 53.4
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.0e-24 117.5 178 53.4
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.0e-24 117.5 178 53.4
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 1.0e-24 117.5 178 53.9
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 1.4e-24 117.1 178 53.9
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.4e-24 117.1 130 63.8
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.4e-24 117.1 130 66.2
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 2.3e-24 116.3 130 63.1
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 2.3e-24 116.3 130 64.6
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 3.0e-24 115.9 148 59.5
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.0e-24 115.5 178 52.8
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.0e-24 115.5 178 52.8
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 4.0e-24 115.5 130 64.6
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 4.0e-24 115.5 178 52.2
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 4.0e-24 115.5 141 48.9
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 5.2e-24 115.2 173 54.9
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 6.7e-24 114.8 130 64.6
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 8.8e-24 114.4 130 64.6
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 8.8e-24 114.4 178 53.9
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.1e-23 114.0 130 64.6
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.1e-23 114.0 130 64.6
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.1e-23 114.0 130 63.1
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.1e-23 114.0 130 65.4
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.5e-23 113.6 130 63.8
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.5e-23 113.6 130 63.8
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.5e-23 113.6 178 52.8
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.5e-23 113.6 143 59.4
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.5e-23 113.6 130 64.6
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 1.5e-23 113.6 130 65.4
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 2.0e-23 113.2 130 63.1
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 2.0e-23 113.2 130 63.1
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.6e-23 112.8 130 63.8
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 3.3e-23 112.5 130 62.3
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 5.7e-23 111.7 130 64.6
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 5.7e-23 111.7 118 50.8
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 7.5e-23 111.3 148 56.8
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 9.7e-23 110.9 130 63.8
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 9.7e-23 110.9 130 62.3
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 9.7e-23 110.9 130 64.6
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.3e-22 110.5 130 63.1
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 2.2e-22 109.8 130 60.8
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 2.2e-22 109.8 130 63.8
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 2.8e-22 109.4 133 63.9
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 2.8e-22 109.4 189 48.7
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 3.7e-22 109.0 178 51.1
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 3.7e-22 109.0 190 48.4
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 8.2e-22 107.8 178 50.0
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 1.4e-21 107.1 130 61.5
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.8e-21 106.7 130 60.8
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 1.8e-21 106.7 130 61.5
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 2.4e-21 106.3 190 47.9
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 2.4e-21 106.3 148 56.1
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 3.1e-21 105.9 148 56.8
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.2e-20 104.0 130 60.8
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.6e-20 103.6 148 55.4
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 3.5e-20 102.4 148 52.7
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 2.1e-17 93.2 133 47.4
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 3.0e-16 89.4 133 42.1
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 4.0e-16 89.0 89 60.7
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 9.1e-13 77.8 70 72.9
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.7e-12 76.3 43 81.4
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.7e-12 76.3 43 81.4
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 2.7e-12 76.3 43 79.1
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 4.5e-12 75.5 132 40.2
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.5e-10 70.5 41 73.2
Cc06_g01550 Coffea canephora HOM05D004899 ORTHO05D154049 1.9e-10 70.1 33 90.9
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 3.2e-10 69.3 68 60.3
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 7.2e-10 68.2 42 73.8
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 2.3e-08 63.2 39 76.9
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 4.0e-08 62.4 39 76.9
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 8.8e-08 61.2 36 80.6
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 4.4e-07 58.9 43 65.1
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.8e-06 56.2 36 72.2
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 3.7e-06 55.8 36 72.2
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 8.3e-06 54.7 83 48.2


User provided reference genes

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