Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 0.0e+00 1114.4 590 100.0
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.9e-167 592.8 618 54.2
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.3e-164 583.2 599 57.1
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 2.4e-161 573.2 602 57.5
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.5e-160 570.5 625 52.5
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 2.9e-159 566.2 612 56.7
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 4.9e-159 565.5 610 56.7
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.9e-150 537.0 594 53.9
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 2.2e-143 513.5 619 53.2
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.9e-143 513.1 601 52.4
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 3.5e-141 506.1 582 51.2
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 6.7e-140 501.9 605 51.2
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.6e-138 497.3 582 48.5
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 3.6e-133 479.6 587 52.1
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.8e-132 477.2 588 51.2
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 3.0e-132 476.5 576 52.1
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.5e-131 474.2 581 52.2
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 9.7e-131 471.5 593 50.3
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.6e-130 470.7 598 48.5
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.2e-130 470.3 591 48.7
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.2e-130 470.3 588 49.0
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 2.8e-130 469.9 576 51.2
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 2.8e-130 469.9 582 48.8
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.1e-129 468.0 588 48.3
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 3.1e-129 466.5 582 52.9
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 4.1e-129 466.1 596 48.8
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 2.0e-128 463.8 588 47.8
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 4.5e-128 462.6 577 48.5
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 2.2e-127 460.3 589 49.7
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.8e-127 459.5 581 48.9
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 5.0e-127 459.1 578 48.6
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.1e-126 458.0 585 48.0
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.2e-126 456.4 605 45.1
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 4.2e-126 456.1 584 50.9
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 5.5e-126 455.7 585 47.9
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 7.2e-126 455.3 587 50.4
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.2e-125 454.5 587 47.9
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.6e-125 454.1 585 46.8
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.7e-125 453.4 546 50.0
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 3.6e-125 453.0 582 50.9
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 6.1e-125 452.2 589 47.9
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 6.1e-125 452.2 611 48.1
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 3.9e-124 449.5 583 47.7
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 8.8e-124 448.4 585 49.4
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.5e-123 447.6 589 49.1
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 2.6e-123 446.8 546 48.7
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 3.3e-123 446.4 597 45.2
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 4.4e-123 446.0 579 47.5
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 7.4e-123 445.3 548 49.1
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.3e-122 444.5 583 47.5
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.3e-122 444.5 586 48.6
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.2e-122 443.7 553 52.3
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 3.7e-122 443.0 576 50.5
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.8e-121 440.7 547 51.9
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 2.4e-121 440.3 588 48.0
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 2.4e-121 440.3 578 45.0
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.1e-121 439.5 551 49.0
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 5.3e-121 439.1 584 46.2
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 3.4e-120 436.4 576 47.4
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 4.5e-120 436.0 551 51.5
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 5.9e-120 435.6 589 47.0
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.0e-119 434.9 551 51.4
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.0e-119 434.9 564 47.7
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.7e-119 434.1 572 50.0
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 3.8e-119 433.0 562 48.9
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.0e-119 432.6 584 46.2
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 8.5e-119 431.8 578 49.0
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 1.2e-117 427.9 579 47.0
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.6e-117 427.6 582 47.6
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 3.7e-114 416.4 570 46.8
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.1e-113 414.8 575 44.7
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 4.1e-113 412.9 555 44.9
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 9.1e-113 411.8 587 45.8
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 2.6e-112 410.2 580 47.4
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.3e-111 407.9 590 46.8
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.2e-110 402.9 597 42.0
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 2.1e-109 400.6 599 40.4
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.4e-108 397.9 571 43.1
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 6.7e-108 395.6 553 43.2
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 6.7e-108 395.6 586 44.4
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 3.3e-107 393.3 587 44.6
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.0e-104 384.0 572 42.3
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 3.5e-104 383.3 571 42.7
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 1.0e-103 381.7 585 42.7
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 1.7e-103 380.9 567 43.4
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.7e-103 380.9 562 43.6
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.2e-103 380.6 570 43.0
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 3.8e-103 379.8 567 43.4
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 5.0e-103 379.4 543 47.3
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 2.5e-102 377.1 569 42.2
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.6e-101 374.4 562 43.1
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 2.7e-101 373.6 563 43.0
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 5.2e-100 369.4 571 42.0
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.8e-97 360.9 467 45.0
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 3.5e-96 356.7 599 42.1
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 3.5e-96 356.7 600 39.3
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 5.9e-96 355.9 596 40.1
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.5e-94 351.3 572 44.1
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 9.5e-94 348.6 589 41.9
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 3.6e-93 346.7 519 43.5
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.7e-90 337.8 496 44.4
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.0e-87 328.6 560 40.0
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.7e-87 327.8 163 98.8
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 2.1e-85 320.9 723 36.0
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.2e-83 315.1 287 58.9
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 2.9e-82 310.5 336 50.0
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.7e-82 310.1 578 38.9
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.1e-81 308.5 546 38.6
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 7.0e-81 305.8 652 35.0
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 9.2e-81 305.4 311 54.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 5.0e-79 299.7 554 37.4
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 9.5e-78 295.4 581 37.2
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 8.0e-77 292.4 490 38.2
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.1e-76 292.0 543 38.3
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 2.3e-76 290.8 569 36.9
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 4.6e-72 276.6 470 41.9
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.7e-71 274.6 534 36.0
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 3.3e-70 270.4 641 34.3
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.3e-63 247.7 588 32.0
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 1.4e-60 238.4 562 33.5
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 4.4e-59 233.4 671 29.4
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 4.6e-56 223.4 648 28.9
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 4.6e-56 223.4 444 41.9
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 6.6e-55 219.5 568 30.3
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.6e-53 214.9 281 39.9
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.6e-51 207.6 236 50.0
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 2.1e-48 198.0 518 31.5
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 8.4e-42 176.0 186 51.1
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 9.6e-38 162.5 186 53.8
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 2.6e-35 154.5 291 29.2
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 4.5e-35 153.7 494 25.1
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 3.2e-33 147.5 308 33.8
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.3e-30 137.5 574 26.8
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 7.4e-30 136.3 155 53.5
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.0e-27 128.3 131 52.7
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 2.0e-27 128.3 291 31.3
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 6.5e-18 96.7 163 31.3
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 1.4e-17 95.5 119 47.9
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 4.2e-17 94.0 81 56.8
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.2e-17 94.0 81 56.8
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 4.3e-14 84.0 125 43.2
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 5.7e-14 83.6 82 52.4
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 2.6e-06 58.2 169 30.8


User provided reference genes

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