Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 6.8e-110 400.6 190 100.0
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 8.6e-89 330.5 190 78.4
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 2.5e-88 328.9 189 78.8
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 5.6e-88 327.8 188 79.8
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 7.3e-88 327.4 187 79.1
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 1.2e-87 326.6 187 78.1
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.6e-87 326.2 188 79.3
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 2.8e-87 325.5 187 77.5
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 6.1e-87 324.3 189 76.7
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 4.0e-86 321.6 190 74.7
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 9.8e-85 317.0 190 77.4
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 2.2e-84 315.8 192 76.0
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 2.4e-83 312.4 183 77.6
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 9.2e-83 310.5 190 75.3
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 9.2e-83 310.5 182 76.4
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 1.0e-81 307.0 191 73.8
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 1.7e-81 306.2 190 75.3
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 1.9e-80 302.8 190 72.1
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.9e-80 302.8 190 72.1
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 1.9e-80 302.8 189 72.0
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 2.5e-80 302.4 185 76.2
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 3.3e-80 302.0 183 77.0
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 3.3e-80 302.0 190 72.6
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 7.3e-80 300.8 190 71.6
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 7.3e-80 300.8 190 71.1
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 9.5e-80 300.4 190 72.1
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 9.5e-80 300.4 189 72.5
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 9.5e-80 300.4 190 72.6
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 1.2e-79 300.1 190 69.5
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.6e-79 299.7 190 71.6
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.6e-79 299.7 190 71.6
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 2.1e-79 299.3 190 69.5
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 2.1e-79 299.3 189 72.5
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 2.1e-79 299.3 190 72.1
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 2.8e-79 298.9 189 73.0
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 4.7e-79 298.1 190 72.1
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 6.2e-79 297.7 186 73.7
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 6.2e-79 297.7 189 72.5
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.4e-78 296.6 190 72.6
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 2.3e-78 295.8 190 72.1
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 5.2e-78 294.7 191 69.1
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 5.2e-78 294.7 190 71.1
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 6.8e-78 294.3 191 69.1
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 8.9e-78 293.9 224 63.4
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.5e-77 293.1 190 73.2
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 1.5e-77 293.1 186 73.7
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 3.4e-77 292.0 205 67.8
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 9.8e-77 290.4 189 72.0
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.7e-76 289.7 188 71.3
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.9e-76 288.9 190 70.5
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 3.7e-76 288.5 190 69.5
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 1.1e-75 287.0 190 70.0
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 1.1e-75 287.0 190 68.9
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 1.4e-75 286.6 191 72.8
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 1.9e-75 286.2 190 68.9
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.9e-75 286.2 190 69.5
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 4.1e-75 285.0 187 69.5
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 5.4e-75 284.6 190 68.9
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 5.4e-75 284.6 190 70.0
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.6e-74 283.1 189 68.8
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 6.0e-74 281.2 187 67.4
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 6.0e-74 281.2 187 67.4
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 6.0e-74 281.2 189 67.2
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 1.0e-73 280.4 186 67.7
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 5.1e-73 278.1 190 66.8
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 5.1e-73 278.1 188 67.0
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 1.9e-72 276.2 184 66.3
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 3.3e-72 275.4 187 72.2
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 4.3e-72 275.0 190 65.8
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 4.3e-72 275.0 189 68.3
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 5.6e-72 274.6 184 67.9
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 7.3e-72 274.2 190 65.8
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 9.5e-72 273.9 190 65.3
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 9.5e-72 273.9 187 66.3
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 9.5e-72 273.9 187 66.3
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.2e-71 273.5 187 66.3
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 2.1e-71 272.7 190 65.3
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 2.8e-71 272.3 188 64.9
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 6.2e-71 271.2 190 68.9
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 6.2e-71 271.2 190 64.7
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 6.2e-71 271.2 190 64.7
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 1.1e-70 270.4 219 60.3
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.4e-70 270.0 190 68.4
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 1.4e-70 270.0 189 65.6
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.8e-70 269.6 190 66.3
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 4.0e-70 268.5 188 66.5
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 5.2e-70 268.1 190 64.7
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 5.2e-70 268.1 189 64.6
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 6.8e-70 267.7 191 64.4
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 5.8e-69 264.6 189 65.1
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.2e-68 262.7 189 69.3
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 2.2e-68 262.7 190 63.7
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 4.1e-67 258.5 195 65.6
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 1.6e-66 256.5 192 62.5
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 2.7e-66 255.8 190 63.2
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 4.6e-66 255.0 188 63.3
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 2.3e-65 252.7 185 62.7
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 3.0e-65 252.3 189 63.5
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.9e-65 251.9 190 65.3
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.9e-64 249.6 190 61.1
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.3e-64 248.8 149 77.2
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 6.2e-63 244.6 190 60.0
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 4.0e-62 241.9 188 62.2
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 8.9e-62 240.7 180 68.9
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.2e-61 240.4 185 63.2
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 1.2e-61 240.4 174 67.2
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 2.0e-61 239.6 185 63.8
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.4e-59 232.6 191 60.2
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 4.2e-59 231.9 149 69.1
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 7.1e-59 231.1 180 62.8
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 9.3e-59 230.7 193 62.7
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.5e-56 223.4 190 58.9
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 2.1e-55 219.5 186 55.9
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 2.8e-55 219.2 187 56.1
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.6e-55 218.8 189 60.3
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 4.8e-55 218.4 187 56.1
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 8.1e-55 217.6 189 53.4
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 1.2e-53 213.8 188 54.8
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.2e-51 205.7 136 67.6
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 2.5e-40 169.5 111 69.4
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.1e-30 135.6 84 71.4
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.5e-29 133.7 110 57.3
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 4.5e-29 132.1 82 73.2
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 6.5e-28 128.3 101 65.3
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 4.5e-21 105.5 121 47.9
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 3.6e-18 95.9 95 51.6
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 5.5e-11 72.0 76 44.7


User provided reference genes

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