Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 0.0e+00 1639.0 867 100.0
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 8.1e-110 402.5 999 36.4
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 1.5e-108 398.3 915 37.7
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 1.1e-106 392.1 920 37.7
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 8.4e-83 312.8 925 33.0
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 3.9e-80 303.9 908 33.1
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 5.9e-76 290.0 896 32.6
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 1.0e-75 289.3 894 32.6
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 8.5e-75 286.2 695 36.3
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 1.8e-72 278.5 911 31.3
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 1.8e-72 278.5 697 35.6
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 8.2e-70 269.6 607 36.2
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 3.1e-69 267.7 895 31.6
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 9.1e-69 266.2 890 33.0
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 2.9e-67 261.2 926 31.0
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 2.9e-67 261.2 888 30.6
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 5.7e-63 246.9 924 32.6
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 5.7e-63 246.9 822 33.7
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 1.3e-62 245.7 887 31.7
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 3.1e-61 241.1 860 32.0
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 3.1e-61 241.1 653 37.5
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 1.6e-57 228.8 922 29.8
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 6.1e-57 226.9 872 30.0
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 4.0e-56 224.2 939 31.1
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 8.8e-56 223.0 980 29.5
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 4.4e-55 220.7 906 30.5
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 5.0e-51 207.2 992 28.8
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 1.1e-50 206.1 901 30.2
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 1.1e-50 206.1 857 31.2
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 2.1e-49 201.8 970 28.1
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 6.8e-48 196.8 830 31.4
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 4.4e-47 194.1 795 30.7
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 5.7e-47 193.7 977 29.0
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 1.3e-46 192.6 788 29.8
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 1.4e-45 189.1 491 35.4
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 5.4e-45 187.2 916 30.6
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 1.5e-42 179.1 291 43.6
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 3.2e-42 177.9 806 27.4
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 7.2e-42 176.8 720 30.0
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 2.1e-41 175.3 685 30.1
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 2.1e-41 175.3 839 29.7
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 2.7e-41 174.9 687 31.3
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 8.0e-41 173.3 786 28.5
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 1.4e-40 172.6 950 28.7
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.0e-39 168.7 952 29.5
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 2.0e-39 168.7 919 27.7
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 3.4e-39 167.9 980 27.7
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.4e-39 167.9 962 29.2
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.7e-38 164.5 959 29.6
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.8e-37 162.2 871 26.5
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 4.1e-37 161.0 993 27.4
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 7.0e-37 160.2 463 36.9
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.6e-36 159.1 947 28.2
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 3.5e-36 157.9 341 36.1
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 2.9e-35 154.8 949 27.7
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 6.6e-35 153.7 937 27.5
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 1.5e-34 152.5 868 28.8
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 4.3e-34 151.0 341 37.0
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 2.8e-33 148.3 626 31.6
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 2.8e-33 148.3 620 30.2
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 6.1e-33 147.1 365 35.1
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 6.1e-33 147.1 463 35.6
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 4.0e-32 144.4 475 32.4
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 5.2e-32 144.1 987 26.1
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 6.8e-32 143.7 508 30.9
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 2.6e-31 141.7 472 31.6
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 9.8e-31 139.8 544 30.5
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 9.8e-31 139.8 612 29.4
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 1.3e-30 139.4 486 31.7
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 2.9e-30 138.3 918 26.8
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 8.3e-30 136.7 448 34.4
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 1.1e-29 136.3 489 30.5
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 1.4e-29 136.0 856 27.6
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 1.8e-29 135.6 578 29.4
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 3.2e-29 134.8 632 28.8
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 4.1e-29 134.4 602 30.6
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 7.0e-29 133.7 682 28.6
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 9.2e-29 133.3 479 30.3
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 2.7e-28 131.7 338 36.1
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 3.5e-28 131.3 313 37.4
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 1.7e-27 129.0 465 30.8
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 6.6e-27 127.1 417 33.6
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 6.6e-27 127.1 417 33.6
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 6.6e-27 127.1 417 33.6
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 1.1e-26 126.3 332 33.4
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 3.3e-26 124.8 632 27.2
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 1.6e-25 122.5 419 30.8
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 2.8e-25 121.7 415 31.6
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 4.7e-25 120.9 978 24.4
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 8.0e-25 120.2 364 30.8
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 1.0e-24 119.8 407 36.1
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 2.3e-24 118.6 399 34.3
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 5.2e-24 117.5 608 30.1
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 1.5e-23 115.9 530 29.2
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 3.4e-23 114.8 221 41.6
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 7.5e-23 113.6 253 30.8
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 2.2e-22 112.1 115 60.9
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 3.7e-22 111.3 303 34.0
Lsat_1_v5_gn_7_36681 Lactuca sativa HOM05D006920 ORTHO05D005895 2.4e-21 108.6 331 31.7
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 3.2e-21 108.2 245 40.4
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 5.4e-21 107.5 232 37.9
CSS0016721 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 7.0e-21 107.1 347 32.0
CSS0038644 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 7.0e-21 107.1 347 32.0
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 1.2e-20 106.3 431 31.1
CSS0027095 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 3.0e-19 101.7 348 30.7
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 3.9e-19 101.3 106 60.4
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 6.6e-19 100.5 72 59.7
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 2.5e-18 98.6 132 52.3
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 5.6e-18 97.4 665 27.5
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 1.6e-17 95.9 406 27.3
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 2.1e-17 95.5 233 39.5
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 8.1e-17 93.6 62 71.0
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.3e-16 92.0 201 36.3
CSS0039023 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 2.3e-16 92.0 436 28.9
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 2.3e-16 92.0 902 22.7
CSS0014816 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 5.2e-16 90.9 439 28.7
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 4.4e-15 87.8 285 33.0
Glyma.18G092000 Glycine max HOM05D006920 ORTHO05D005895 9.8e-15 86.7 260 31.5
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 4.9e-14 84.3 370 27.0
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.4e-13 82.8 132 38.6
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 1.2e-12 79.7 136 38.2
CSS0019085 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 3.9e-11 74.7 430 28.1
Zm00001eb160100 Zea mays HOM05D006920 ORTHO05D005895 5.1e-11 74.3 241 33.2
AagrBONN_evm.TU.Sc2ySwM_228.2245 Anthoceros agrestis HOM05D006920 ORTHO05D005895 7.3e-10 70.5 236 32.2
Pp3c19_22680 Physcomitrium patens HOM05D006920 ORTHO05D005895 3.6e-09 68.2 135 42.2
arahy.Tifrunner.gnm1.ann1.J1TK4W Arachis hypogaea HOM05D006920 ORTHO05D005895 8.1e-09 67.0 73 46.6
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 8.1e-09 67.0 110 33.6
A10p14250 Brassica napus HOM05D010535 ORTHO05D005895 3.1e-08 65.1 54 59.3
BraA10t43516Z Brassica rapa HOM05D010535 ORTHO05D005895 3.1e-08 65.1 54 59.3
Hma1.2p1_3164F.1_g333530 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 3.4e-07 61.6 129 32.6


User provided reference genes

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