Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 3.4e-233 811.2 394 100.0
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 4.6e-153 545.0 366 70.8
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 5.1e-144 515.0 368 69.0
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 4.0e-141 505.4 372 66.1
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 9.9e-140 500.7 347 68.0
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 1.3e-139 500.4 382 65.2
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.7e-139 500.0 352 67.6
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 1.1e-138 497.3 386 64.0
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.2e-137 493.8 369 64.5
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 2.7e-137 492.7 337 69.4
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 6.0e-137 491.5 336 71.4
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 1.3e-136 490.3 334 72.2
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.8e-136 490.0 369 65.6
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 3.0e-136 489.2 344 69.5
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 3.9e-136 488.8 386 63.0
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 5.1e-136 488.4 335 67.5
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 6.7e-136 488.0 378 63.0
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 1.5e-135 486.9 334 71.9
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 4.3e-135 485.3 342 69.3
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 7.4e-135 484.6 381 64.8
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.3e-134 483.8 336 68.8
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 1.3e-134 483.8 318 71.1
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.6e-134 483.4 343 67.1
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 8.2e-134 481.1 448 57.4
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 3.1e-133 479.2 333 70.6
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 4.0e-133 478.8 394 61.4
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 6.9e-133 478.0 352 65.3
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 9.0e-133 477.6 384 62.5
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 9.0e-133 477.6 362 66.9
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 1.2e-132 477.2 366 65.8
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.5e-132 476.9 349 67.6
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 2.0e-132 476.5 384 61.2
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 2.6e-132 476.1 343 68.2
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.8e-132 474.9 371 65.5
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 5.8e-132 474.9 343 67.9
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 7.6e-132 474.6 384 62.5
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 2.2e-131 473.0 343 64.7
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.9e-131 472.6 379 63.1
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 3.8e-131 472.2 368 63.6
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 3.8e-131 472.2 368 63.3
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 1.9e-130 469.9 320 70.6
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 2.5e-130 469.5 370 63.5
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 2.5e-130 469.5 362 64.6
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 2.5e-130 469.5 388 61.3
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 3.2e-130 469.2 352 66.8
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.2e-130 468.8 333 68.8
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 5.5e-130 468.4 326 68.1
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 6.0e-129 464.9 324 68.2
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 6.0e-129 464.9 333 67.0
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 6.0e-129 464.9 388 61.3
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 7.9e-129 464.5 377 62.1
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 7.9e-129 464.5 391 61.4
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.0e-128 464.2 351 63.2
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.8e-128 463.4 348 64.4
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 3.0e-128 462.6 372 61.6
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 5.1e-128 461.8 339 65.2
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 6.7e-128 461.5 371 63.1
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 8.7e-128 461.1 345 64.9
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 1.9e-127 459.9 371 62.0
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 7.4e-127 458.0 351 64.4
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 7.4e-127 458.0 346 68.2
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 2.2e-126 456.4 319 66.5
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 2.8e-126 456.1 373 60.1
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 4.8e-126 455.3 359 61.8
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 6.3e-126 454.9 391 59.3
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 8.2e-126 454.5 347 63.1
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 1.1e-125 454.1 401 57.4
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 5.3e-125 451.8 349 63.3
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 6.9e-125 451.4 354 65.8
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 1.2e-124 450.7 334 65.0
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 1.5e-124 450.3 340 64.7
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.4e-124 449.1 323 65.6
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.4e-124 449.1 323 65.6
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 6.5e-123 444.9 359 61.6
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 6.5e-123 444.9 334 64.4
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 2.5e-122 443.0 313 66.1
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.2e-122 442.2 346 64.5
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.2e-121 440.7 344 62.8
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 1.6e-121 440.3 345 63.2
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 2.1e-121 439.9 331 64.0
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 2.1e-121 439.9 386 58.3
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 2.7e-121 439.5 280 74.3
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 3.6e-121 439.1 348 60.3
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 4.6e-121 438.7 340 62.9
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 5.1e-120 435.3 340 60.0
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 4.3e-119 432.2 366 59.6
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 2.2e-118 429.9 273 74.4
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 1.8e-117 426.8 306 66.7
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 9.1e-117 424.5 334 63.2
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 2.2e-115 419.9 284 69.4
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.2e-115 419.9 395 57.7
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.9e-115 419.5 345 58.6
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.4e-114 417.2 356 59.3
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 1.9e-114 416.8 284 67.6
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 4.2e-114 415.6 372 57.5
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 7.2e-114 414.8 316 65.2
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 5.7e-111 405.2 327 62.4
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 1.7e-110 403.7 345 59.7
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 3.4e-108 396.0 363 56.5
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 9.4e-106 387.9 349 55.6
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 2.7e-105 386.3 365 55.9
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 3.3e-103 379.4 332 56.9
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.6e-100 370.5 290 63.4
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 1.7e-99 367.1 328 59.5
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 2.3e-96 356.7 305 57.0
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 5.2e-96 355.5 394 49.5
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 6.3e-94 348.6 362 52.5
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.6e-92 344.0 334 53.6
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 1.0e-88 331.3 298 55.7
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 4.4e-87 325.9 295 54.2
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 5.2e-80 302.4 242 63.2
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 1.2e-79 301.2 302 50.0
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 7.0e-77 292.0 266 56.8
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 8.3e-70 268.5 214 59.8
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.1e-69 268.1 261 54.8
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.4e-69 267.7 300 46.0
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 5.2e-64 249.2 297 39.7
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 2.9e-62 243.4 294 45.9
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 2.2e-54 217.2 230 48.3
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 1.2e-47 194.9 129 70.5
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 2.9e-38 163.7 145 53.1
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 4.3e-34 149.8 90 72.2
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 9.0e-32 142.1 85 75.3
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.4e-29 134.8 199 39.7
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 3.4e-23 113.6 68 69.1
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 2.3e-11 74.3 108 41.7
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 5.1e-11 73.2 69 53.6
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 3.3e-10 70.5 42 71.4
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 8.5e-06 55.8 36 61.1


User provided reference genes

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