Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 0.0e+00 1294.6 666 100.0
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 8.0e-275 950.3 673 71.5
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 3.5e-262 908.3 668 70.2
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 1.3e-261 906.4 668 70.2
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 5.0e-261 904.4 663 68.9
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 8.6e-261 903.7 668 69.5
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.5e-260 902.9 670 70.7
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.5e-260 902.1 675 67.6
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 3.3e-260 901.7 668 69.5
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 2.0e-257 892.5 673 69.7
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 2.1e-254 882.5 662 66.9
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 3.5e-254 881.7 686 65.6
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 3.5e-254 881.7 686 65.6
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 4.6e-254 881.3 663 67.3
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 6.2e-251 870.9 675 65.3
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 1.4e-250 869.8 637 70.8
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 5.2e-250 867.8 672 66.7
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 2.0e-249 865.9 690 65.2
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 1.3e-248 863.2 647 67.5
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 6.4e-248 860.9 668 66.2
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 2.1e-246 855.9 671 66.6
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 3.0e-245 852.0 674 65.7
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 5.1e-245 851.3 671 66.2
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 8.6e-245 850.5 662 65.9
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.9e-244 849.4 768 60.7
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 3.3e-244 848.6 682 63.3
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 3.3e-244 848.6 635 66.6
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 1.2e-243 846.7 670 65.8
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 4.7e-243 844.7 743 59.4
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.8e-242 842.8 669 65.6
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 3.1e-242 842.0 671 66.2
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 5.2e-242 841.3 669 64.1
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.6e-241 839.0 670 65.5
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 2.6e-241 839.0 675 63.9
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 9.3e-239 830.5 668 64.4
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 6.0e-238 827.8 675 64.1
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 1.3e-237 826.6 670 63.4
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 3.0e-237 825.5 672 63.7
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 3.3e-236 822.0 669 62.2
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 1.4e-234 816.6 671 61.7
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.4e-234 815.8 675 64.3
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 5.3e-234 814.7 674 64.1
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 6.9e-234 814.3 670 62.5
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.2e-230 803.5 646 65.0
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 3.0e-229 798.9 669 61.7
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 3.3e-228 795.4 585 68.7
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 4.3e-228 795.0 679 62.2
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.4e-225 785.4 676 61.4
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 4.5e-225 785.0 664 62.0
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 7.6e-225 784.3 672 62.1
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 9.9e-225 783.9 671 61.8
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 1.7e-224 783.1 664 62.5
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 3.2e-223 778.9 664 62.3
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 5.5e-223 778.1 672 61.0
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 7.1e-223 777.7 671 60.4
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 2.7e-222 775.8 673 61.1
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 2.7e-222 775.8 666 61.7
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.7e-222 775.8 642 62.1
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 1.0e-221 773.9 671 59.9
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.0e-221 773.9 671 62.1
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 1.3e-221 773.5 670 60.6
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 3.9e-221 771.9 671 59.8
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 8.7e-221 770.8 671 61.4
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 8.7e-221 770.8 663 60.8
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 1.9e-220 769.6 665 60.5
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 2.5e-220 769.2 670 59.9
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 2.4e-218 762.7 678 58.7
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 5.8e-217 758.1 682 58.7
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 2.7e-214 749.2 928 46.0
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 3.5e-214 748.8 673 59.6
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.5e-212 742.7 675 60.1
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 9.0e-210 734.2 665 58.0
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 3.4e-209 732.3 667 58.3
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 3.2e-207 725.7 663 58.5
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 3.2e-207 725.7 668 58.8
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 5.5e-207 724.9 668 56.7
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 2.7e-206 722.6 665 58.0
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 6.1e-206 721.5 679 57.7
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 1.3e-205 720.3 663 57.6
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 1.9e-204 716.5 663 58.2
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 5.7e-204 714.9 668 57.8
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 5.3e-202 708.4 661 55.5
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 6.9e-202 708.0 671 57.7
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 1.5e-201 706.8 663 57.5
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 2.2e-200 703.0 665 56.8
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 2.9e-200 702.6 662 56.3
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 1.9e-199 699.9 663 56.3
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 7.2e-199 698.0 663 55.8
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 2.7e-198 696.0 665 55.9
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 7.9e-198 694.5 659 56.0
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.9e-197 692.2 658 55.3
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 5.0e-192 675.2 665 53.5
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 3.3e-188 662.5 722 50.1
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 8.2e-187 657.9 679 52.0
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 1.6e-182 643.7 680 51.3
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 4.0e-181 639.0 629 53.6
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 7.5e-180 634.8 693 53.2
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 2.4e-162 576.6 676 47.6
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.9e-159 567.0 557 53.7
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 3.0e-157 559.7 492 59.1
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 5.2e-157 558.9 658 45.7
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 5.4e-154 548.9 520 54.8
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 9.2e-154 548.1 671 44.4
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 3.5e-153 546.2 723 43.0
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 2.5e-127 460.3 538 46.5
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 7.1e-98 362.5 305 63.3
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 2.5e-90 337.4 730 32.3
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 1.8e-88 331.3 534 38.8
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 6.3e-86 322.8 373 48.0
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.1e-79 302.0 667 31.5
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 2.5e-74 284.3 650 29.2
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 8.5e-59 232.6 173 70.5
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 2.3e-48 198.0 181 56.4
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 3.0e-48 197.6 399 36.3
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 3.5e-44 184.1 475 30.1
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 7.3e-42 176.4 146 65.1
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 4.3e-34 150.6 143 55.9
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 1.7e-30 138.7 341 33.7
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 6.4e-30 136.7 107 73.8
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.4e-24 119.0 173 46.2
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.9e-22 111.3 111 48.6
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 3.3e-18 97.8 69 63.8
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 3.1e-16 91.3 87 48.3
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 8.9e-16 89.7 79 53.2
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.7e-14 85.5 52 73.1
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 1.4e-13 82.4 49 79.6
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 4.7e-09 67.4 82 45.1
Pp3c19_8370 Physcomitrium patens HOM05D005966 ORTHO05D007584 2.0e-07 62.0 112 36.6
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 7.6e-07 60.1 37 78.4
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 3.8e-06 57.8 37 75.7


User provided reference genes

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