Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 3.8e-199 698.0 350 100.0
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 5.1e-103 378.6 308 65.3
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.5e-99 367.1 341 58.7
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.2e-97 359.0 347 57.3
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.7e-96 356.3 310 61.3
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 6.0e-96 355.1 311 59.8
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 3.9e-95 352.4 347 55.9
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.5e-94 350.5 343 52.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.9e-94 350.1 308 60.7
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.3e-94 349.4 250 67.2
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.6e-94 347.8 250 68.4
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.6e-93 347.1 270 63.0
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 1.1e-92 344.4 270 62.6
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.4e-91 339.3 250 66.4
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 5.4e-89 332.0 257 64.2
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 7.1e-89 331.6 379 49.9
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 9.3e-89 331.3 288 58.3
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 7.8e-88 328.2 249 62.2
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.3e-87 327.4 249 63.1
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.6e-87 325.1 266 62.0
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 8.7e-87 324.7 250 60.8
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.5e-86 323.9 229 70.3
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.9e-86 323.6 252 67.5
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.3e-86 322.8 250 60.4
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 5.6e-86 322.0 250 59.2
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 4.8e-85 318.9 247 63.2
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.8e-85 318.9 250 61.6
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 8.1e-85 318.2 250 60.4
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-84 317.8 249 64.7
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 5.3e-84 315.5 255 57.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.3e-84 315.5 250 59.6
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 6.9e-84 315.1 259 58.3
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 6.9e-84 315.1 254 61.0
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.5e-83 313.9 250 61.6
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 2.6e-83 313.2 247 61.9
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.6e-83 313.2 251 61.4
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 2.6e-83 313.2 263 57.0
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.6e-83 313.2 467 42.4
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 3.4e-83 312.8 271 56.5
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 9.9e-83 311.2 250 59.6
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 2.9e-82 309.7 250 59.2
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.8e-82 309.3 259 58.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 3.8e-82 309.3 260 57.7
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 8.4e-82 308.1 250 58.0
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 8.4e-82 308.1 247 59.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.4e-81 307.4 250 57.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.4e-81 307.4 251 61.0
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.9e-81 307.0 249 59.4
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.2e-81 306.2 249 60.2
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 3.2e-81 306.2 259 57.9
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.2e-81 305.8 259 57.9
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 5.4e-81 305.4 299 53.8
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 9.3e-81 304.7 249 61.0
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.1e-80 303.5 249 58.2
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 7.9e-80 301.6 246 59.3
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 7.9e-80 301.6 250 57.6
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.3e-79 300.8 250 58.4
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 3.0e-79 299.7 250 57.6
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 3.0e-79 299.7 263 57.4
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.6e-78 295.4 263 54.4
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.1e-77 293.5 263 54.0
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 8.1e-77 291.6 349 45.8
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.8e-76 290.4 260 56.5
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 4.0e-76 289.3 231 60.6
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.5e-75 287.3 307 48.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 4.5e-75 285.8 250 56.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.3e-73 278.1 258 51.9
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.6e-72 277.3 258 51.9
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 2.1e-72 276.9 225 60.0
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.8e-71 273.9 246 54.1
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 8.7e-71 271.6 235 57.9
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 5.6e-70 268.9 260 49.2
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 5.6e-70 268.9 257 50.2
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 7.4e-70 268.5 254 53.1
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 9.6e-70 268.1 333 44.7
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.6e-69 267.3 263 48.7
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 6.2e-69 265.4 269 51.3
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.1e-68 264.6 244 54.5
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.4e-68 264.2 261 49.0
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.8e-68 263.8 261 49.4
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.4e-68 263.5 260 48.5
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 2.4e-68 263.5 261 49.4
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.0e-67 260.4 257 48.6
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 2.6e-67 260.0 261 48.3
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 3.4e-67 259.6 250 46.8
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.0e-66 258.1 245 50.6
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 6.5e-66 255.4 180 66.7
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.9e-65 253.8 345 42.9
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.9e-65 253.8 225 56.0
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.9e-65 253.8 259 51.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.9e-65 253.8 252 50.4
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 2.5e-65 253.4 259 47.1
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.2e-65 253.1 279 44.8
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 3.2e-65 253.1 250 45.2
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 3.2e-65 253.1 250 45.2
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 4.2e-65 252.7 252 50.4
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.0e-63 248.1 173 69.9
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.3e-63 246.9 261 45.6
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 3.9e-63 246.1 268 45.1
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 5.1e-63 245.7 250 50.0
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.9e-62 243.8 259 45.9
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 7.4e-62 241.9 253 47.8
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.1e-60 236.5 253 46.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 4.1e-60 236.1 254 46.1
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.1e-60 236.1 254 46.1
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 5.3e-60 235.7 173 67.1
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-59 234.6 253 45.8
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 5.9e-59 232.3 250 44.0
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.7e-59 231.9 253 45.5
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.7e-58 230.7 253 45.5
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.9e-57 227.3 184 59.8
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.2e-57 226.5 193 54.4
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 4.2e-57 226.1 252 46.0
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 9.4e-57 224.9 217 52.1
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 3.0e-55 219.9 259 43.2
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.3e-54 216.1 230 50.4
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 7.4e-54 215.3 205 54.6
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.2e-49 199.5 152 65.1
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.0e-47 193.4 341 38.1
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 9.7e-46 188.3 225 48.4
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.2e-45 187.2 163 57.7
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.3e-45 185.7 140 62.9
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.0e-43 180.6 183 51.9
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.1e-41 174.9 187 47.6
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.1e-40 170.6 123 69.1
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.1e-38 164.9 125 63.2
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.3e-38 163.3 151 53.0
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 9.7e-38 161.8 252 37.3
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 3.7e-37 159.8 102 71.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 3.1e-36 156.8 413 29.1
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-35 154.8 180 46.7
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.6e-35 153.7 137 55.5
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.7e-34 151.0 151 53.0
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.7e-32 142.9 296 34.1
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 4.8e-29 132.9 419 26.5
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.4e-28 131.3 211 36.0
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 4.5e-27 126.3 243 33.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.7e-26 124.4 248 31.5
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.2e-22 111.7 165 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.0e-22 110.9 257 27.6
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.4e-20 104.8 85 62.4
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.1e-20 103.6 77 64.9
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.9e-19 99.4 91 50.5
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.3e-18 98.2 199 30.7
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 4.2e-17 93.2 74 60.8
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 5.5e-17 92.8 146 37.0
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 8.0e-16 89.0 64 68.8
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 5.7e-14 82.8 146 34.9
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 5.7e-14 82.8 146 34.9
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 2.2e-13 80.9 132 32.6
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.4e-12 78.2 60 65.0
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.4e-12 77.4 102 36.3
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.6e-11 74.7 101 36.6
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 7.8e-11 72.4 59 55.9
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 7.8e-11 72.4 65 53.8
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 8.0e-08 62.4 38 73.7
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 1.2e-06 58.5 59 49.2


User provided reference genes

Program Settings