Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 6.6e-73 277.3 145 100.0
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.5e-61 239.6 145 85.5
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.2e-60 235.7 145 83.4
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.9e-60 235.3 145 84.1
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 2.9e-60 235.3 145 84.1
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.9e-60 235.3 145 84.1
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.4e-60 234.2 145 83.4
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.3e-60 233.8 145 83.4
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.3e-57 226.5 155 79.4
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.3e-57 226.5 155 79.4
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 3.9e-57 224.9 155 77.4
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 5.1e-57 224.6 155 78.1
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 6.6e-57 224.2 155 78.1
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 8.6e-57 223.8 145 86.2
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.1e-56 223.4 155 76.1
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.5e-56 223.0 155 78.1
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.5e-56 223.0 155 78.1
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.5e-56 222.2 155 76.1
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 4.3e-56 221.5 145 86.2
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 5.6e-56 221.1 155 76.8
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.2e-55 219.9 155 76.8
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.6e-55 219.5 155 76.1
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 2.8e-55 218.8 155 75.5
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 3.6e-55 218.4 157 77.1
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 4.7e-55 218.0 144 79.2
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 6.2e-55 217.6 155 74.8
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 2.4e-54 215.7 145 83.4
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.0e-54 214.9 155 74.8
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 5.2e-54 214.5 154 76.6
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 6.8e-54 214.2 145 84.1
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 8.9e-54 213.8 155 75.5
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.2e-53 213.4 155 74.2
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.5e-53 213.0 155 74.8
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.5e-53 213.0 144 83.3
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 2.6e-53 212.2 155 75.5
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 2.6e-53 212.2 156 75.6
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 3.4e-53 211.8 145 82.8
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 3.4e-53 211.8 155 72.9
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 9.9e-53 210.3 155 72.9
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.7e-52 209.5 154 74.0
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 3.8e-52 208.4 154 72.7
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 3.8e-52 208.4 154 72.1
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.1e-51 206.8 141 78.7
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.4e-51 206.5 156 73.7
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.4e-51 206.5 156 73.7
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.9e-51 206.1 154 72.1
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 2.4e-51 205.7 147 76.2
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 2.4e-51 205.7 156 73.1
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 3.2e-51 205.3 145 75.9
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.1e-51 204.9 156 73.1
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 7.1e-51 204.1 156 71.2
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 9.2e-51 203.8 157 71.3
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.6e-50 203.0 154 73.4
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.3e-49 199.9 155 71.6
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.7e-49 199.5 155 71.6
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.3e-49 199.1 155 71.0
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 3.0e-49 198.7 156 71.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 3.9e-49 198.4 156 71.2
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 6.6e-49 197.6 170 68.8
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 6.6e-49 197.6 155 71.0
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 6.6e-49 197.6 145 78.6
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.9e-48 196.1 146 75.3
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 2.5e-48 195.7 155 71.0
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.3e-48 194.1 155 69.7
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 9.6e-48 193.7 151 70.9
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 6.2e-47 191.0 158 67.7
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.8e-46 189.5 155 68.4
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.4e-46 189.1 160 67.5
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.2e-45 186.8 155 68.4
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 2.6e-45 185.7 157 67.5
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 5.8e-45 184.5 220 51.8
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.2e-44 182.6 139 71.2
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 2.2e-44 182.6 155 69.0
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 2.9e-44 182.2 128 78.1
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.9e-44 182.2 144 70.8
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 8.4e-44 180.6 155 68.4
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.1e-43 180.3 153 68.0
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.4e-43 179.9 155 66.5
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.4e-43 179.9 155 64.5
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.9e-43 179.5 155 64.5
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.9e-43 179.5 152 66.4
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.4e-43 179.1 149 69.1
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 3.2e-43 178.7 167 62.3
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 4.2e-43 178.3 199 55.8
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 1.6e-42 176.4 155 66.5
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 2.7e-42 175.6 155 62.6
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 4.6e-42 174.9 155 65.8
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 6.0e-42 174.5 147 65.3
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.7e-41 172.9 151 64.9
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.7e-41 172.9 152 67.8
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 3.9e-41 171.8 155 65.2
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.5e-40 169.1 155 62.6
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.5e-40 169.1 155 62.6
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 5.6e-40 167.9 155 63.9
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 9.6e-40 167.2 153 66.0
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-39 166.4 147 65.3
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.1e-39 166.0 155 61.9
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 4.8e-39 164.9 153 64.1
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 4.8e-39 164.9 93 90.3
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.1e-38 163.7 155 62.6
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 1.8e-38 162.9 152 63.8
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.8e-38 162.9 154 61.7
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.1e-38 162.2 154 59.1
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.1e-38 162.2 153 59.5
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 3.1e-38 162.2 155 58.7
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.1e-38 162.2 167 55.1
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.1e-38 162.2 151 64.9
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.0e-38 161.8 154 61.0
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 4.0e-38 161.8 154 62.3
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 6.9e-38 161.0 155 60.6
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.2e-37 160.2 154 61.7
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.0e-37 159.5 155 60.6
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 2.6e-37 159.1 182 56.6
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.6e-37 159.1 155 56.8
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.6e-37 159.1 154 59.7
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.3e-36 156.8 117 73.5
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 4.9e-36 154.8 141 62.4
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 4.9e-36 154.8 141 62.4
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 6.4e-36 154.5 93 82.8
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.1e-35 153.7 155 56.8
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.9e-35 152.9 93 81.7
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 4.2e-35 151.8 129 66.7
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 7.1e-35 151.0 267 40.8
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 7.1e-35 151.0 157 57.3
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.2e-34 150.2 148 60.1
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.1e-34 149.4 153 58.2
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 7.9e-34 147.5 114 70.2
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.0e-33 147.1 153 55.6
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.0e-33 147.1 125 65.6
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.3e-33 146.7 182 53.3
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.8e-33 146.4 95 82.1
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 2.3e-33 146.0 153 56.9
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.0e-33 145.6 153 59.5
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.1e-32 143.7 152 57.2
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.1e-32 143.7 152 57.2
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.1e-32 143.7 152 57.2
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 1.5e-32 143.3 153 56.9
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.9e-32 142.9 150 55.3
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 4.3e-32 141.7 152 55.9
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.3e-31 140.2 143 59.4
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.6e-31 139.8 153 54.9
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.1e-31 139.4 153 54.2
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 8.1e-31 137.5 116 65.5
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 1.1e-30 137.1 96 72.9
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 1.4e-30 136.7 142 57.7
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 9.0e-30 134.0 112 67.0
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.2e-29 133.7 150 54.0
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.2e-29 133.7 122 63.9
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 3.4e-29 132.1 144 55.6
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 3.4e-29 132.1 103 67.0
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.5e-29 131.7 111 68.5
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.3e-28 130.2 148 53.4
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 6.4e-28 127.9 174 48.3
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.1e-27 124.4 94 69.1
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 9.3e-27 124.0 101 65.3
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.7e-26 122.5 123 56.9
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 2.3e-25 119.4 75 82.7
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 3.0e-25 119.0 122 61.5
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.7e-25 117.9 124 54.0
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.5e-24 116.7 156 46.8
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 9.0e-22 107.5 155 46.5
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 2.5e-19 99.4 71 67.6
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 3.2e-19 99.0 52 98.1
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 7.1e-19 97.8 167 43.7
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 9.3e-19 97.4 143 48.3
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 6.7e-17 91.3 85 52.9
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.5e-16 89.4 91 60.4
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 2.8e-15 85.9 61 68.9
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 6.3e-15 84.7 85 62.4
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 8.2e-15 84.3 91 56.0
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 7.7e-13 77.8 127 41.7
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 7.7e-13 77.8 41 87.8
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.0e-12 75.1 58 63.8
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.1e-11 73.9 46 73.9
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.9e-11 73.2 58 63.8
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.6e-10 68.6 66 51.5
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.9e-09 65.5 85 44.7
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 1.1e-08 63.9 41 75.6
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.8e-07 59.3 89 43.8
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.7e-07 58.9 90 42.2


User provided reference genes

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