Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 2223.4 1119 100.0
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1567.4 1111 70.3
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1552.7 1110 69.6
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1538.5 1102 69.9
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1521.9 1104 69.2
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1500.7 1110 67.6
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1487.6 1086 67.7
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1487.2 1074 67.5
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1474.1 1087 67.2
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1469.5 1113 66.4
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1469.5 1157 63.4
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1467.2 1112 66.2
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1458.4 1114 65.7
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1454.5 1123 65.5
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1451.0 1111 65.7
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1445.3 1123 65.4
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1443.3 1111 65.0
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1442.9 1111 65.3
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1436.0 1130 64.8
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1433.7 1105 64.8
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1430.2 1111 65.4
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1428.3 1110 64.7
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1427.9 1093 66.0
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1422.1 1109 64.5
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1421.4 1111 63.3
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1419.8 1122 64.6
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1418.3 1137 63.1
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1415.2 1112 64.1
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1412.5 1119 63.6
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1411.0 1123 63.8
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1407.9 1114 62.8
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1389.8 1107 63.6
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1387.5 1114 62.8
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1384.4 1112 62.9
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1379.4 1130 62.7
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1379.4 1114 62.4
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1379.0 1107 63.3
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1377.5 1108 63.4
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1373.6 1147 61.1
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1367.1 1109 62.1
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1357.8 1099 61.9
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1356.3 1110 61.3
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1352.0 1110 61.6
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1350.1 1104 61.6
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1349.7 1111 60.7
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1349.3 1109 60.9
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1348.6 1123 60.6
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1347.0 1110 61.4
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1346.3 1109 59.3
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1345.5 1110 61.8
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1344.3 1208 56.8
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1338.9 1107 60.6
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1338.2 1111 60.5
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1333.9 1236 56.7
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1333.5 1111 60.5
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1333.5 1173 59.2
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1333.5 1112 59.7
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1332.8 1057 63.9
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1330.5 1108 60.2
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1326.2 1128 60.6
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1325.5 1109 60.6
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1324.3 1110 60.7
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1319.7 1109 60.5
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1314.7 1088 61.6
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1311.2 1121 59.0
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1309.7 1108 59.6
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1307.0 1116 61.4
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1304.3 1009 65.8
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1298.9 1115 59.6
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1295.0 1115 59.0
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1292.3 1110 59.4
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1292.3 1152 57.6
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1291.6 1111 59.6
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1290.4 1111 59.3
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1289.6 1111 59.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1289.2 1118 60.3
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1288.1 1112 59.4
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1288.1 1119 58.7
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1285.8 1110 57.8
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1283.1 1119 58.5
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1283.1 1121 60.1
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1282.3 1000 65.8
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1281.2 1119 58.6
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1280.4 1129 58.0
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1274.6 1121 59.4
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1274.2 1112 59.1
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1241.5 1109 56.0
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1239.6 1110 57.9
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1224.2 1118 57.2
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1203.7 1111 56.5
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1201.0 1026 59.8
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1196.8 1109 54.7
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1159.8 1111 53.2
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1156.0 1219 52.8
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1154.4 1145 54.1
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1141.3 1117 52.4
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1119.4 1111 52.3
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1104.4 940 61.0
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1098.2 1103 52.4
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1091.3 979 58.8
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1076.2 910 59.6
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 7.8e-299 1030.8 1172 48.9
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.1e-271 940.6 847 57.7
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.4e-271 939.5 740 63.4
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 7.4e-265 917.9 648 68.1
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 1.7e-240 837.0 1124 41.7
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 2.2e-240 836.6 1129 44.0
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 2.4e-239 833.2 1184 39.5
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.0e-222 776.9 699 57.7
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.5e-196 691.0 938 42.1
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.3e-163 581.6 1110 35.3
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 1.4e-154 551.6 349 79.1
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 4.3e-148 530.0 379 69.7
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.9e-144 517.3 473 55.6
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 2.6e-137 494.2 505 56.0
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 6.8e-125 453.0 382 60.5
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 3.8e-120 437.2 330 64.2
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 2.9e-104 384.4 222 77.9
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 1.0e-96 359.4 1076 26.3
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.8e-92 343.6 474 41.6
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 4.7e-86 323.9 209 74.2
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 9.9e-84 316.2 214 69.6
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.2e-82 311.2 209 68.9
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.6e-79 300.4 395 42.8
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.1e-77 296.2 163 82.2
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.7e-73 281.6 1032 24.4
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 1.9e-71 275.4 293 50.9
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.1e-69 269.6 146 80.8
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 8.1e-62 243.4 189 59.3
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 3.2e-50 204.9 985 23.0
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 4.3e-47 194.5 167 57.5
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.7e-41 175.3 143 64.3
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 7.7e-36 157.1 92 83.7
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 8.5e-35 153.7 122 60.7
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 1.1e-34 153.3 110 67.3
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.5e-34 151.0 209 41.1
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.7e-33 148.7 122 53.3
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.8e-32 146.0 382 31.4
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 6.7e-32 144.1 302 31.5
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.7e-31 140.2 114 71.9
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 4.1e-29 134.8 180 39.4
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 1.1e-26 126.7 119 68.9
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 3.6e-25 121.7 209 36.4
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 1.0e-24 120.2 107 51.4
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.0e-23 115.9 86 62.8
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.2e-22 112.5 88 61.4
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 3.5e-20 105.1 83 63.9
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 7.2e-18 97.4 69 62.3
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 1.5e-15 89.7 65 60.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 2.8e-14 85.5 57 64.9
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 4.1e-13 81.6 87 48.3
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 3.5e-12 78.6 209 31.1
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 1.8e-08 66.2 45 68.9
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 4.0e-08 65.1 41 68.3
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 4.4e-07 61.6 101 38.6
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 3.7e-06 58.5 57 75.4


User provided reference genes

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