Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06380 Coffea canephora HOM05D001557 ORTHO05D001299 2.4e-62 241.9 115 100.0
Nitab4.5_0027164g0010 Nicotiana tabacum HOM05D001557 ORTHO05D001299 3.1e-41 171.8 114 70.2
Nitab4.5_0010740g0030 Nicotiana tabacum HOM05D001557 ORTHO05D001299 1.5e-40 169.5 114 69.3
Oeu039621.1 Olea europaea HOM05D001557 ORTHO05D001299 2.0e-40 169.1 114 68.4
PGSC0003DMG400029310 Solanum tuberosum HOM05D001557 ORTHO05D001299 9.3e-38 160.2 114 64.0
Peaxi162Scf00029g00012 Petunia axillaris HOM05D001557 ORTHO05D001299 1.2e-37 159.8 114 65.8
CAN.G574.33 Capsicum annuum HOM05D001557 ORTHO05D001299 6.0e-37 157.5 114 64.9
unitig_22.g5995 Utricularia gibba HOM05D001557 ORTHO05D001299 3.0e-36 155.2 114 63.2
Solyc01g007750.3 Solanum lycopersicum HOM05D001557 ORTHO05D001299 6.7e-36 154.1 114 64.0
Sopen01g003290 Solanum pennellii HOM05D001557 ORTHO05D001299 8.7e-36 153.7 114 64.0
PGSC0003DMG400035474 Solanum tuberosum HOM05D001557 ORTHO05D001299 1.1e-35 153.3 114 63.2
Sc20g0006640 Simmondsia chinensis HOM05D001557 ORTHO05D001299 4.2e-30 134.8 114 57.9
MSTRG.10408 Avicennia marina HOM05D001557 ORTHO05D001299 5.5e-30 134.4 114 56.1
ECA233G5174 Erigeron canadensis HOM05D001557 ORTHO05D001299 3.5e-29 131.7 115 56.5
MBI17_g29498_MAGBIO Magnolia biondii HOM05D001557 ORTHO05D001299 2.3e-28 129.0 114 57.9
Sabra16G0075100 Salix brachista HOM05D001557 ORTHO05D001299 3.0e-28 128.6 114 57.0
Potri.016G072200 Populus trichocarpa HOM05D001557 ORTHO05D001299 5.1e-28 127.9 114 57.0
TPR.G33842 Trifolium pratense HOM05D001557 ORTHO05D001299 6.7e-28 127.5 114 52.6
Manes.08G031700 Manihot esculenta HOM05D001557 ORTHO05D001299 8.7e-28 127.1 114 56.1
Potri.006G205000 Populus trichocarpa HOM05D001557 ORTHO05D001299 1.9e-27 125.9 115 55.7
DCAR_020718 Daucus carota HOM05D001557 ORTHO05D001299 2.5e-27 125.6 114 51.8
Glyma.15G259600 Glycine max HOM05D001557 ORTHO05D001299 2.1e-26 122.5 114 52.6
PGR142G1023 Punica granatum HOM05D001557 ORTHO05D001299 2.1e-26 122.5 114 54.4
Sabra06G0158000 Salix brachista HOM05D001557 ORTHO05D001299 3.7e-26 121.7 115 54.8
HanXRQChr02g0053271 Helianthus annuus HOM05D001557 ORTHO05D001299 4.8e-26 121.3 115 53.9
CDE02G3812 Ceratophyllum demersum HOM05D001557 ORTHO05D001299 1.1e-25 120.2 114 52.6
HPP92_001099 Vanilla planifolia HOM05D001557 ORTHO05D001299 5.3e-25 117.9 114 52.6
CDE09G0047 Ceratophyllum demersum HOM05D001557 ORTHO05D001299 9.0e-25 117.1 114 50.9
SGA_v2.0_scaffold184G40032 Striga asiatica HOM05D001557 ORTHO05D001299 2.6e-24 115.5 114 49.1
AUR62006269 Chenopodium quinoa HOM05D001557 ORTHO05D001299 2.5e-22 109.0 114 48.2
AUR62037039 Chenopodium quinoa HOM05D001557 ORTHO05D001299 3.2e-22 108.6 114 49.1
EL10Ac7g16813 Beta vulgaris HOM05D001557 ORTHO05D001299 4.2e-22 108.2 114 49.1
Dinv12324 Davidia involucrata HOM05D001557 ORTHO05D001299 1.2e-21 106.7 114 50.0
Lj1P1048T24 Lonicera japonica HOM05D001557 ORTHO05D001299 2.1e-21 105.9 114 47.4
SalBow8G4987 Salvia bowleyana HOM05D001557 ORTHO05D001299 3.5e-21 105.1 70 71.4
Aqoxy2G02376 Aquilegia oxysepala HOM05D001557 ORTHO05D001299 4.6e-21 104.8 115 47.0
arahy.Tifrunner.gnm1.ann1.12W07B Arachis hypogaea HOM05D004241 ORTHO05D001299 4.6e-21 104.8 114 47.4
arahy.Tifrunner.gnm1.ann1.DE57MX Arachis hypogaea HOM05D004241 ORTHO05D001299 4.6e-21 104.8 114 47.4
Lalb_Chr25g0284751 Lupinus albus HOM05D001557 ORTHO05D001299 4.6e-21 104.8 114 47.4
Lj3g0005048 Lotus japonicus HOM05D001557 ORTHO05D001299 1.3e-20 103.2 114 47.4
FAN14G5498 Fragaria x ananassa HOM05D001557 ORTHO05D001299 2.3e-20 102.4 114 47.4
Ah.15g090490 Amaranthus hybridus HOM05D001557 ORTHO05D001299 3.0e-20 102.1 114 46.5
FAN05G3032 Fragaria x ananassa HOM05D001557 ORTHO05D001299 5.1e-20 101.3 114 47.4
Ca_03604_v3 Cicer arietinum L. HOM05D001557 ORTHO05D001299 6.7e-20 100.9 114 43.9
Glyma.08G167900 Glycine max HOM05D001557 ORTHO05D001299 1.9e-19 99.4 114 45.6
CANSAT11G0738 Cannabis sativa HOM05D001557 ORTHO05D001299 3.3e-19 98.6 114 47.4
Cpa.g.sc104.58 Carica papaya HOM05D001557 ORTHO05D001299 4.3e-19 98.2 114 48.2
FvH4_6g19990 Fragaria vesca HOM05D001557 ORTHO05D001299 4.3e-19 98.2 114 46.5
Phvul.005G059600 Phaseolus vulgaris HOM05D001557 ORTHO05D001299 4.3e-19 98.2 114 44.7
RcHm_v2.0_Chr3g0475441 Rosa chinensis HOM05D001557 ORTHO05D001299 4.3e-19 98.2 114 46.5
Medtr2g067230 Medicago truncatula HOM05D001557 ORTHO05D001299 7.4e-19 97.4 114 42.1
CsaV3_6G041010 Cucumis sativus L. HOM05D001557 ORTHO05D001299 1.3e-18 96.7 114 46.5
Ciclev10012147m.g Citrus clementina HOM05D001557 ORTHO05D001299 1.6e-18 96.3 114 46.5
Psat1g013520 Pisum sativum HOM05D001557 ORTHO05D001299 2.2e-18 95.9 114 42.1
ClCG01G014920 Citrullus lanatus HOM05D001557 ORTHO05D001299 3.7e-18 95.1 114 46.5
VMungo1080G0783 Vigna mungo HOM05D001557 ORTHO05D001299 3.7e-18 95.1 114 43.9
Haze_19684 Corylus avellana HOM05D001557 ORTHO05D001299 8.2e-18 94.0 114 43.9
Aa31LG5G21140 Aethionema arabicum HOM05D001557 ORTHO05D001299 1.1e-17 93.6 115 47.8
PSO384G2057 Papaver somniferum HOM05D001557 ORTHO05D001299 1.4e-17 93.2 114 43.9
Sed0016619 Sechium edule HOM05D001557 ORTHO05D001299 1.4e-17 93.2 114 43.0
TAR369G0564 Trochodendron aralioides HOM05D001557 ORTHO05D001299 1.4e-17 93.2 114 45.6
MELO3C024579.2 Cucumis melo HOM05D001557 ORTHO05D001299 1.8e-17 92.8 114 45.6
PSO135G0713 Papaver somniferum HOM05D001557 ORTHO05D001299 2.4e-17 92.4 114 43.9
Thecc.05G101300 Theobroma cacao HOM05D001557 ORTHO05D001299 3.1e-17 92.0 114 45.6
BcaC02g07640 Brassica carinata HOM05D001557 ORTHO05D001299 5.3e-17 91.3 115 45.2
A04p27570 Brassica napus HOM05D001557 ORTHO05D001299 5.3e-17 91.3 115 46.1
arahy.Tifrunner.gnm1.ann1.GYFX5G Arachis hypogaea HOM05D001557 ORTHO05D001299 1.2e-16 90.1 107 43.9
C04p65070 Brassica napus HOM05D001557 ORTHO05D001299 1.2e-16 90.1 115 45.2
BolC4t27985H Brassica oleracea HOM05D001557 ORTHO05D001299 1.2e-16 90.1 115 45.2
BraA04t18252Z Brassica rapa HOM05D001557 ORTHO05D001299 1.2e-16 90.1 115 45.2
CiPaw.09G019200 Carya illinoinensis HOM05D001557 ORTHO05D001299 1.2e-16 90.1 114 43.0
CiPaw.10G015600 Carya illinoinensis HOM05D001557 ORTHO05D001299 1.2e-16 90.1 114 42.1
Hma1.2p1_1442F.1_g283770 Hydrangea macrophylla HOM05D001557 ORTHO05D001299 1.2e-16 90.1 107 45.8
Nn6g34751 Nelumbo nucifera HOM05D001557 ORTHO05D001299 1.2e-16 90.1 114 42.1
Gohir.D13G135300 Gossypium hirsutum HOM05D001557 ORTHO05D001299 1.5e-16 89.7 114 46.5
Gorai.013G151800 Gossypium raimondii HOM05D001557 ORTHO05D001299 1.5e-16 89.7 114 46.5
Duzib093G1903 Durio zibethinus HOM05D001557 ORTHO05D001299 2.6e-16 89.0 114 45.6
TWI53G0813 Tripterygium wilfordii HOM05D001557 ORTHO05D001299 3.4e-16 88.6 114 41.2
BcaB06g28906 Brassica carinata HOM05D001557 ORTHO05D001299 5.9e-16 87.8 116 42.2
Thhalv10016909m.g Eutrema salsugineum HOM05D001557 ORTHO05D001299 7.7e-16 87.4 115 44.3
Atru.chr8.1393 Acer truncatum HOM05D001557 ORTHO05D001299 1.0e-15 87.0 114 43.0
Carub.0004s1775 Capsella rubella HOM05D001557 ORTHO05D001299 3.8e-15 85.1 115 43.5
AL4G32100 Arabidopsis lyrata HOM05D001557 ORTHO05D001299 5.0e-15 84.7 115 43.5
AL970U10010 Arabidopsis lyrata HOM05D001557 ORTHO05D001299 5.0e-15 84.7 115 43.5
AT2G36000 Arabidopsis thaliana HOM05D001557 ORTHO05D001299 5.0e-15 84.7 115 43.5
CARHR130260 Cardamine hirsuta HOM05D001557 ORTHO05D001299 1.9e-14 82.8 115 42.6
Sp4g18260 Schrenkiella parvula HOM05D001557 ORTHO05D001299 5.5e-14 81.3 115 42.6
THA.LOC104823635 Tarenaya hassleriana HOM05D001557 ORTHO05D001299 3.6e-13 78.6 115 39.1
Gohir.A13G131900 Gossypium hirsutum HOM05D001557 ORTHO05D001299 3.0e-12 75.5 67 61.2
DCAR_027422 Daucus carota HOM05D001557 ORTHO05D001299 6.7e-12 74.3 117 35.9
SEGI_32809 Sequoiadendron giganteum HOM05D001557 ORTHO05D001299 3.3e-11 72.0 114 40.4
Cfa008965 Carpinus fangiana HOM05D001557 ORTHO05D001299 4.8e-10 68.2 117 35.9
BcaB06g28905 Brassica carinata HOM05D001557 ORTHO05D001299 6.3e-10 67.8 75 49.3
Zm00001eb017630 Zea mays HOM05D001557 ORTHO05D001299 6.3e-10 67.8 114 37.7
CSS0037522 Camellia sinensis var. sinensis HOM05D001557 ORTHO05D001299 1.1e-09 67.0 64 51.6
CiPaw.06G086600 Carya illinoinensis HOM05D001557 ORTHO05D001299 1.4e-09 66.6 117 35.0
Haze_11996 Corylus avellana HOM05D001557 ORTHO05D001299 1.4e-09 66.6 117 35.9
ECA246G3210 Erigeron canadensis HOM05D001557 ORTHO05D001299 1.4e-09 66.6 117 35.0
Nitab4.5_0000040g0140 Nicotiana tabacum HOM05D001557 ORTHO05D001299 6.9e-09 64.3 117 33.3
PGR119G1320 Punica granatum HOM05D001557 ORTHO05D001299 6.9e-09 64.3 117 34.2
PGSC0003DMG400018430 Solanum tuberosum HOM05D001557 ORTHO05D001299 9.1e-09 63.9 117 33.3
CDE08G0018 Ceratophyllum demersum HOM05D001557 ORTHO05D001299 2.6e-08 62.4 117 35.9
Eucgr.G02491 Eucalyptus grandis HOM05D001557 ORTHO05D001299 2.6e-08 62.4 117 34.2
Sopen05g003700 Solanum pennellii HOM05D001557 ORTHO05D001299 4.5e-08 61.6 117 34.2
Solyc05g007840.3 Solanum lycopersicum HOM05D001557 ORTHO05D001299 7.7e-08 60.8 117 33.3
Sed0014117 Sechium edule HOM05D001557 ORTHO05D001299 1.0e-07 60.5 117 31.6
MBI14_g22871_MAGBIO Magnolia biondii HOM05D001557 ORTHO05D001299 2.9e-07 58.9 117 35.0
ATR0753G026 Amborella trichopoda HOM05D000161 ORTHO05D000111 1.1e-06 57.0 112 29.5
PSO013G0284 Papaver somniferum HOM05D001557 ORTHO05D001299 1.1e-06 57.0 117 33.3
PSO832G2716 Papaver somniferum HOM05D001557 ORTHO05D001299 1.1e-06 57.0 117 33.3
Lalb_Chr08g0233421 Lupinus albus HOM05D001557 ORTHO05D001299 1.4e-06 56.6 118 31.4
MD14G1036200 Malus domestica HOM05D001557 ORTHO05D001299 1.4e-06 56.6 70 42.9
ATR0564G074 Amborella trichopoda HOM05D000161 ORTHO05D000111 2.5e-06 55.8 112 28.6
Nn4g23205 Nelumbo nucifera HOM05D001557 ORTHO05D001299 2.5e-06 55.8 153 28.8
QL07p037435 Quercus lobata HOM05D001557 ORTHO05D001299 3.2e-06 55.5 74 40.5
Nitab4.5_0004752g0020 Nicotiana tabacum HOM05D001557 ORTHO05D001299 4.2e-06 55.1 114 30.7
Prupe.7G098000 Prunus persica HOM05D001557 ORTHO05D001299 4.2e-06 55.1 70 41.4
vmacro07463 Vaccinium macrocarpon HOM05D001557 ORTHO05D001299 4.2e-06 55.1 65 41.5
Lj3P1036T14 Lonicera japonica HOM05D001557 ORTHO05D001299 5.5e-06 54.7 153 28.8
Medtr7g081270 Medicago truncatula HOM05D001557 ORTHO05D001299 7.2e-06 54.3 118 33.9
SalBow5G4207 Salvia bowleyana HOM05D001356 ORTHO05D005768 9.4e-06 53.9 51 54.9


User provided reference genes

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