Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 2.6e-109 399.1 248 100.0
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 7.4e-40 168.3 220 61.4
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 5.5e-35 152.1 227 55.9
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 2.1e-34 150.2 228 52.2
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 2.1e-34 150.2 230 52.2
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 6.0e-34 148.7 235 53.2
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 8.7e-33 144.8 232 51.7
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 3.3e-32 142.9 229 52.0
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.3e-32 142.9 219 56.2
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 3.7e-31 139.4 226 50.4
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.4e-30 136.7 235 49.8
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.1e-30 136.3 233 51.5
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 5.3e-30 135.6 230 53.5
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.3e-30 135.6 235 50.6
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 6.9e-30 135.2 223 51.6
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 2.6e-29 133.3 219 51.6
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 2.6e-29 133.3 235 51.9
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 1.7e-28 130.6 196 52.6
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 2.9e-28 129.8 228 50.0
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 4.9e-28 129.0 229 50.2
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 6.5e-28 128.6 232 55.2
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.1e-27 127.9 228 49.1
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.1e-27 127.9 232 51.3
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.4e-27 127.5 219 52.1
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 3.2e-27 126.3 241 49.8
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 1.6e-26 124.0 169 55.0
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 2.1e-26 123.6 229 50.7
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.7e-26 123.2 218 44.0
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 4.6e-26 122.5 198 48.0
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 7.9e-26 121.7 231 51.1
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 7.9e-26 121.7 233 48.5
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 7.9e-26 121.7 231 50.2
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 3.9e-25 119.4 218 50.5
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.9e-25 119.4 190 51.6
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 5.1e-25 119.0 220 51.4
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 8.7e-25 118.2 202 50.0
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 8.7e-25 118.2 230 50.9
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 8.7e-25 118.2 183 49.7
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.9e-24 117.1 219 51.1
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 4.3e-24 115.9 241 47.7
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 5.7e-24 115.5 218 48.2
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 7.4e-24 115.2 219 53.9
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.6e-23 114.0 217 46.5
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 2.2e-23 113.6 223 46.6
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 2.8e-23 113.2 227 50.7
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.1e-22 111.3 226 46.5
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 1.4e-22 110.9 232 48.3
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.8e-22 110.5 233 50.2
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 6.9e-22 108.6 220 47.7
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 2.0e-21 107.1 222 48.6
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 3.4e-21 106.3 261 44.4
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.0e-20 104.8 223 45.7
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.0e-20 104.8 174 52.3
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 3.8e-20 102.8 216 47.7
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 5.0e-20 102.4 231 45.5
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 8.5e-20 101.7 203 41.9
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 8.5e-20 101.7 216 48.1
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 2.1e-18 97.1 186 46.8
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 7.9e-18 95.1 185 51.4
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.0e-17 94.7 229 45.0
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 3.0e-17 93.2 227 44.1
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 8.8e-17 91.7 232 45.3
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 8.8e-17 91.7 229 45.0
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 3.3e-16 89.7 233 42.5
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 4.3e-16 89.4 220 45.0
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.8e-15 86.7 223 42.6
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 3.7e-15 86.3 135 49.6
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 3.7e-15 86.3 229 42.4
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 3.7e-15 86.3 223 43.0
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 4.8e-15 85.9 234 42.3
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 6.3e-15 85.5 223 36.3
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.3e-15 85.5 229 45.4
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 8.2e-15 85.1 165 47.9
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.4e-14 83.6 223 37.2
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 6.9e-14 82.0 187 35.3
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.5e-13 79.3 162 46.9
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.5e-13 79.3 162 46.9
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 4.5e-13 79.3 227 41.9
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 5.0e-12 75.9 224 44.6
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 8.5e-12 75.1 161 41.6
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 3.2e-11 73.2 224 40.6
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 1.6e-10 70.9 86 62.8
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 7.9e-10 68.6 235 32.8
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 7.9e-10 68.6 87 57.5
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.0e-09 68.2 223 39.9
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 3.9e-09 66.2 219 42.5
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 8.8e-09 65.1 193 37.3
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 1.1e-08 64.7 131 47.3
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.6e-08 63.5 199 42.7
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 3.3e-08 63.2 222 39.6
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 3.3e-08 63.2 230 38.3
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 5.7e-08 62.4 223 43.9
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 3.7e-07 59.7 222 43.7
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 6.3e-07 58.9 120 48.3
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 6.3e-07 58.9 120 48.3
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.3e-07 58.9 222 37.4
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 8.2e-07 58.5 164 37.8
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 7.0e-06 55.5 77 48.1


User provided reference genes

Program Settings