Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 0.0e+00 1761.1 902 100.0
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 3.4e-292 1008.4 914 57.2
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 1.7e-275 953.0 950 52.6
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 4.9e-275 951.4 912 55.7
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 4.1e-274 948.3 912 55.9
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 3.1e-269 932.2 912 54.8
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 1.0e-264 917.1 909 53.6
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 3.0e-264 915.6 914 53.7
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 3.7e-259 898.7 917 52.6
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 7.1e-258 894.4 916 51.1
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 1.7e-256 889.8 918 51.1
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 8.6e-256 887.5 917 52.5
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 4.7e-254 881.7 913 51.7
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 1.8e-253 879.8 914 51.6
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 4.0e-253 878.6 918 50.5
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 8.9e-253 877.5 918 51.0
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 8.9e-253 877.5 915 50.3
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 9.9e-252 874.0 919 51.9
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 1.3e-251 873.6 917 50.5
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 1.6e-246 856.7 906 51.5
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 1.6e-246 856.7 867 53.3
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 1.6e-246 856.7 914 50.3
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 2.2e-243 846.3 861 53.1
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 2.9e-243 845.9 911 50.1
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 1.9e-242 843.2 923 50.2
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 2.7e-241 839.3 964 48.4
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 2.1e-238 829.7 940 48.0
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 5.5e-234 815.1 946 47.0
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 6.7e-232 808.1 855 51.6
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 1.1e-231 807.4 934 49.7
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 5.6e-231 805.1 891 48.1
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 5.6e-231 805.1 915 46.9
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 8.1e-230 801.2 986 45.6
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 2.1e-225 786.6 924 47.9
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 1.1e-223 780.8 966 46.5
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.5e-223 780.4 783 51.7
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 4.3e-223 778.9 908 46.6
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.8e-222 776.2 915 45.5
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 2.2e-219 766.5 915 45.0
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 2.9e-219 766.1 860 47.0
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 7.9e-217 758.1 908 45.5
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 4.3e-215 752.3 916 44.5
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 2.2e-214 750.0 922 44.9
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 6.3e-214 748.4 922 44.3
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 1.1e-213 747.7 917 44.8
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 6.9e-213 745.0 916 45.3
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 4.5e-212 742.3 942 45.4
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 5.9e-212 741.9 759 53.4
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 2.2e-211 740.0 914 44.1
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 8.5e-211 738.0 949 43.6
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 3.2e-210 736.1 802 50.7
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 1.0e-203 714.5 765 50.7
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 6.5e-203 711.8 891 44.9
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 1.7e-195 687.2 915 43.3
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 1.6e-193 680.6 793 46.9
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.4e-192 677.6 758 50.3
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 1.3e-190 671.0 802 47.9
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.5e-183 647.5 835 44.8
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 2.2e-182 643.7 659 53.9
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 6.3e-182 642.1 959 41.3
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 1.0e-179 634.8 838 43.3
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 3.6e-177 626.3 674 51.2
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 2.2e-174 617.1 811 44.5
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 6.3e-174 615.5 912 39.7
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 1.3e-171 607.8 657 49.8
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.2e-169 601.3 688 47.8
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 1.4e-165 587.8 869 40.6
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 4.4e-159 566.2 921 38.0
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 3.0e-155 553.5 670 46.9
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 3.7e-150 536.6 485 57.1
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 5.1e-147 526.2 851 38.4
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 1.8e-136 491.1 544 51.7
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 9.6e-130 468.8 737 39.1
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 3.4e-127 460.3 424 58.5
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 1.3e-123 448.4 480 49.0
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 2.5e-109 401.0 340 59.4
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 5.1e-107 393.3 429 48.0
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 4.8e-105 386.7 292 64.7
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 2.2e-102 377.9 628 38.1
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 2.7e-100 370.9 362 52.5
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 1.1e-90 339.0 843 30.8
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 1.7e-86 325.1 931 29.6
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 8.0e-84 316.2 443 45.1
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 3.5e-79 300.8 464 41.2
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 1.3e-78 298.9 245 62.0
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 6.7e-75 286.6 343 43.7
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 4.1e-72 277.3 899 26.3
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 3.0e-67 261.2 871 28.2
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 5.2e-59 233.8 319 44.5
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 9.2e-56 223.0 171 62.6
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 3.3e-53 214.5 662 29.8
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 2.3e-51 208.4 197 55.8
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 8.9e-51 206.5 201 50.2
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 2.6e-50 204.9 172 59.9
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 3.2e-48 198.0 222 47.3
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 4.1e-48 197.6 184 51.1
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 2.5e-37 161.8 146 52.1
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.1e-35 154.8 123 61.0
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 1.2e-34 152.9 128 58.6
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 4.6e-31 141.0 171 50.3
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 6.2e-28 130.6 188 42.0
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.1e-27 129.8 294 35.7
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 2.4e-24 118.6 134 44.0
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 2.1e-23 115.5 103 49.5
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 6.6e-22 110.5 170 38.8
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 6.2e-20 104.0 77 62.3
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.1e-19 103.2 158 36.7
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.4e-19 102.8 97 56.7
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.0e-18 99.0 141 39.0
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.8e-17 94.7 91 52.7
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.6e-15 89.4 95 47.4
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 8.1e-12 77.0 113 36.3
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 3.1e-11 75.1 239 27.2
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 7.6e-10 70.5 64 46.9
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.3e-09 69.7 67 47.8
Manes.04G105600 Manihot esculenta HOM05D001219 ORTHO05D001017 7.9e-07 60.5 518 20.8
Psat6g076200 Pisum sativum HOM05D006439 ORTHO05D008152 1.0e-06 60.1 38 65.8
SEGI_01774 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.0e-06 60.1 39 64.1
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.8e-06 59.3 50 56.0
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 5.1e-06 57.8 102 31.4


User provided reference genes

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