Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 1.2e-203 713.0 377 100.0
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 3.6e-139 498.8 371 74.4
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 3.0e-133 479.2 367 71.9
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 8.1e-131 471.1 343 74.6
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 1.1e-130 470.7 322 78.9
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 4.0e-130 468.8 378 70.1
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 1.5e-129 466.8 363 71.3
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 2.0e-129 466.5 330 76.1
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 1.1e-127 460.7 391 67.3
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.4e-127 460.3 348 73.3
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 2.4e-127 459.5 338 74.3
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 2.4e-127 459.5 361 70.1
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 3.2e-127 459.1 355 71.3
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 9.2e-127 457.6 367 69.5
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.2e-126 457.2 295 81.0
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 1.2e-126 457.2 362 70.2
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 2.7e-126 456.1 331 75.5
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 2.3e-125 453.0 324 75.9
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 2.3e-125 453.0 325 74.8
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 3.9e-125 452.2 326 75.2
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 3.9e-125 452.2 370 67.6
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 6.6e-125 451.4 370 68.4
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 2.5e-124 449.5 295 81.0
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 7.3e-124 448.0 360 68.9
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 9.6e-124 447.6 359 68.5
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 1.6e-123 446.8 379 68.1
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.8e-123 446.0 355 69.6
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 6.2e-123 444.9 362 69.3
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 8.1e-123 444.5 323 74.3
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.1e-122 444.1 291 81.1
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 1.4e-122 443.7 363 68.3
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 3.1e-122 442.6 363 68.0
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 4.0e-122 442.2 374 67.9
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 8.9e-122 441.0 378 66.1
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 8.9e-122 441.0 324 73.5
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 1.2e-121 440.7 360 67.8
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 1.5e-121 440.3 379 66.5
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 2.6e-121 439.5 341 70.1
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 3.4e-121 439.1 347 68.9
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 5.8e-121 438.3 325 73.5
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 5.8e-121 438.3 325 73.5
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 9.9e-121 437.6 363 67.5
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 2.9e-120 436.0 374 66.8
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 2.9e-120 436.0 352 68.5
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 2.9e-120 436.0 366 66.4
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 2.9e-120 436.0 355 69.6
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.9e-120 436.0 355 69.6
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 3.8e-120 435.6 362 67.1
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.8e-120 435.6 355 69.3
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.8e-120 435.6 355 69.6
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 4.9e-120 435.3 372 68.0
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 8.4e-120 434.5 322 72.7
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 8.4e-120 434.5 322 72.7
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 9.3e-119 431.0 346 68.2
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.2e-118 430.6 368 65.8
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 1.6e-118 430.3 277 80.5
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 2.1e-118 429.9 375 66.4
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 4.6e-118 428.7 375 66.4
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 4.6e-118 428.7 376 65.4
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 6.0e-118 428.3 290 77.9
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 6.0e-118 428.3 370 65.9
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 1.0e-117 427.6 360 67.5
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 1.3e-117 427.2 350 67.7
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 1.7e-117 426.8 324 71.9
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 6.6e-117 424.9 380 63.4
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 6.6e-117 424.9 299 75.6
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 8.7e-117 424.5 324 72.2
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 1.9e-116 423.3 309 74.1
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 2.5e-116 422.9 288 78.8
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 4.3e-116 422.2 307 75.2
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 2.1e-115 419.9 259 83.0
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 4.8e-115 418.7 339 67.3
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 3.1e-114 416.0 378 68.0
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 3.1e-114 416.0 403 60.8
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 9.0e-114 414.5 291 75.3
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 3.4e-113 412.5 380 63.2
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 5.8e-113 411.8 295 75.6
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 2.2e-112 409.8 277 78.7
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 8.4e-112 407.9 305 73.8
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 1.1e-111 407.5 247 85.4
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 3.2e-111 406.0 274 78.5
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 5.6e-108 395.2 369 60.4
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 5.6e-108 395.2 267 75.7
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 2.1e-107 393.3 324 67.6
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 1.4e-106 390.6 407 59.0
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 3.1e-106 389.4 366 60.9
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 1.2e-105 387.5 303 71.3
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 7.6e-105 384.8 242 84.7
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 6.4e-104 381.7 248 81.0
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 1.1e-103 380.9 365 60.3
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 3.5e-102 375.9 331 65.3
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 1.1e-100 370.9 319 63.9
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 1.9e-100 370.2 329 65.7
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 1.3e-99 367.5 503 47.1
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 4.8e-99 365.5 508 46.7
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 2.2e-96 356.7 292 66.1
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 7.1e-95 351.7 263 70.0
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 2.1e-94 350.1 274 67.9
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.8e-90 337.0 237 75.9
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 4.1e-90 335.9 298 64.8
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 2.6e-89 333.2 268 63.4
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.4e-89 332.8 207 82.6
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 1.3e-88 330.9 278 66.5
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 2.9e-88 329.7 267 66.3
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 1.8e-85 320.5 301 64.8
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 4.5e-81 305.8 337 56.7
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 1.4e-79 300.8 178 87.6
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 5.7e-76 288.9 365 52.3
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 1.3e-75 287.7 276 55.4
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 4.1e-74 282.7 263 57.0
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 6.7e-69 265.4 263 56.7
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 2.6e-68 263.5 293 53.2
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 3.3e-68 263.1 184 74.5
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 2.1e-62 243.8 157 79.0
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 4.7e-62 242.7 214 62.1
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.3e-59 234.6 263 49.4
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 2.2e-59 233.8 199 64.8
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.3e-53 213.8 129 83.7
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 5.7e-52 209.1 130 83.8
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 3.5e-49 199.9 136 75.0
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 4.0e-45 186.4 115 84.3
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.6e-41 174.5 105 79.0
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.6e-36 157.1 253 37.2
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 1.2e-28 131.7 176 44.9
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-25 121.7 187 39.0
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 3.5e-25 120.2 90 68.9
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 6.0e-25 119.4 82 81.7
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 6.4e-19 99.4 130 50.0
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 9.9e-12 75.5 92 53.3
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 3.8e-11 73.6 120 46.7
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 2.7e-09 67.4 278 25.5
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 7.8e-09 65.9 36 88.9


User provided reference genes

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