Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 6.7e-159 563.9 277 100.0
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 5.8e-118 427.9 274 77.4
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 9.8e-118 427.2 273 77.7
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 1.7e-117 426.4 278 76.6
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 2.7e-115 419.1 273 76.2
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.0e-114 417.2 251 82.5
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 1.0e-114 417.2 274 76.6
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.5e-113 413.3 271 76.4
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 1.9e-113 412.9 277 75.5
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 3.3e-113 412.1 256 80.9
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 9.5e-113 410.6 279 76.7
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 1.2e-112 410.2 255 80.4
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 2.8e-112 409.1 255 79.6
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 4.7e-112 408.3 279 75.3
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 6.2e-112 407.9 277 73.6
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 1.1e-111 407.1 258 79.5
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 1.8e-111 406.4 257 80.2
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 2.3e-111 406.0 257 78.6
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 4.0e-111 405.2 278 74.5
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 4.0e-111 405.2 276 75.7
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 5.2e-111 404.8 261 78.2
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 5.2e-111 404.8 256 78.5
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 8.9e-111 404.1 288 72.6
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 8.9e-111 404.1 281 73.0
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 8.9e-111 404.1 281 73.0
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 8.9e-111 404.1 274 75.2
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.5e-110 403.3 274 74.8
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 2.6e-110 402.5 287 73.5
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.6e-110 402.5 287 73.5
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 3.4e-110 402.1 271 74.9
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 4.4e-110 401.7 288 73.3
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 5.8e-110 401.4 279 73.8
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 5.8e-110 401.4 287 73.2
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 5.8e-110 401.4 287 73.2
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 9.8e-110 400.6 269 77.3
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 1.3e-109 400.2 268 75.0
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 2.2e-109 399.4 280 72.9
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.9e-109 399.1 280 73.9
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 3.7e-109 398.7 279 72.8
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 3.7e-109 398.7 254 78.7
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 8.3e-109 397.5 281 73.3
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.1e-108 397.1 261 77.8
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 3.2e-108 395.6 279 73.1
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 5.4e-108 394.8 261 77.4
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 1.2e-107 393.7 280 71.8
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.6e-107 393.3 282 71.3
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 2.1e-107 392.9 285 71.2
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 2.7e-107 392.5 260 78.5
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 7.8e-107 391.0 263 74.9
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.0e-106 390.6 265 75.5
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.0e-106 390.6 271 73.4
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 3.0e-106 389.0 279 73.5
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 3.0e-106 389.0 277 72.6
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 1.5e-105 386.7 305 66.9
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 2.5e-105 386.0 281 70.8
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 5.6e-105 384.8 271 71.2
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.2e-104 383.6 269 73.6
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 4.7e-104 381.7 318 65.7
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 4.7e-104 381.7 257 74.3
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 6.2e-104 381.3 256 74.2
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.1e-103 380.6 281 68.3
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 2.3e-103 379.4 263 73.0
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 3.1e-103 379.0 277 71.5
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 4.0e-103 378.6 277 71.1
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 1.2e-102 377.1 271 71.2
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 1.2e-102 377.1 270 71.1
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 4.4e-102 375.2 242 77.7
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 7.6e-102 374.4 212 85.8
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 9.9e-102 374.0 281 69.4
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.2e-101 372.9 256 75.0
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.1e-100 370.5 269 72.9
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 1.4e-100 370.2 254 73.2
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 9.2e-100 367.5 283 67.5
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 1.6e-99 366.7 256 73.4
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 4.6e-99 365.2 254 72.4
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 6.0e-99 364.8 280 67.9
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 1.9e-97 359.8 252 73.8
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 2.5e-97 359.4 287 66.2
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 3.3e-97 359.0 287 65.2
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 3.3e-97 359.0 287 65.2
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 7.3e-97 357.8 268 67.9
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 7.3e-97 357.8 268 67.9
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 2.1e-96 356.3 274 67.9
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 2.8e-96 355.9 273 67.0
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 3.6e-96 355.5 287 64.8
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 3.6e-96 355.5 288 64.6
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 6.2e-96 354.8 268 69.0
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 6.2e-96 354.8 253 70.8
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 1.4e-95 353.6 270 68.1
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 1.8e-95 353.2 287 64.5
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 2.4e-95 352.8 276 68.5
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 3.1e-95 352.4 274 66.4
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 5.2e-95 351.7 276 67.4
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 6.8e-95 351.3 276 67.0
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 6.8e-95 351.3 325 59.4
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 1.2e-94 350.5 284 64.4
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 3.4e-94 349.0 268 66.8
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.7e-93 346.7 271 67.2
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 6.4e-93 344.7 275 65.5
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 6.4e-93 344.7 212 79.2
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 6.0e-91 338.2 208 77.4
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 1.3e-90 337.0 257 65.8
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.3e-90 337.0 263 64.3
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.9e-89 333.2 253 63.2
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 3.3e-89 332.4 276 62.3
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 4.4e-86 322.0 229 73.4
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 7.4e-81 304.7 259 63.7
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 2.2e-77 293.1 268 61.6
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.2e-77 293.1 259 61.8
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.4e-76 290.4 194 73.7
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.9e-76 290.0 224 64.3
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 5.5e-76 288.5 193 74.6
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 9.6e-73 277.7 188 72.9
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 2.1e-72 276.6 193 71.5
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 1.5e-70 270.4 191 70.2
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 2.0e-70 270.0 251 55.4
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 3.5e-67 259.2 189 72.0
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 4.1e-63 245.7 186 69.4
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 9.0e-63 244.6 267 49.1
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.4e-60 237.3 273 52.0
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 2.5e-60 236.5 208 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 3.0e-58 229.6 208 56.2
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 8.2e-48 194.9 170 55.9
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 1.9e-44 183.7 200 47.0
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.7e-40 170.6 188 52.1
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 2.2e-37 160.2 277 35.7
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 6.3e-32 142.1 84 85.7
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 2.5e-28 130.2 82 81.7
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 9.4e-28 128.3 276 31.5
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 2.1e-27 127.1 172 41.3
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.6e-22 110.9 54 96.3
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 2.0e-22 110.5 56 92.9
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 1.0e-18 98.2 52 86.5
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 8.3e-08 62.0 149 30.9
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 5.4e-07 59.3 153 25.5
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 9.2e-07 58.5 165 29.1
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.2e-06 58.2 183 27.3
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.2e-06 58.2 172 27.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 4.6e-06 56.2 181 24.9
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 5.9e-06 55.8 171 26.9
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.9e-06 55.8 175 26.9
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.9e-06 55.8 175 26.9
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 5.9e-06 55.8 194 26.8
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 5.9e-06 55.8 152 27.6
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 5.9e-06 55.8 184 26.1
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 7.8e-06 55.5 185 27.6


User provided reference genes

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