Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1739.2 860 100.0
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1338.2 859 78.1
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1337.8 838 78.5
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1325.1 867 75.9
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1321.6 838 77.7
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1314.3 871 76.2
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1313.5 873 76.6
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1292.3 872 75.0
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1291.2 870 75.3
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1288.5 873 73.5
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1288.1 880 73.8
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1273.8 928 70.4
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1273.5 903 72.1
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1272.3 873 74.5
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1269.6 841 75.7
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1268.8 856 73.6
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1264.6 887 72.8
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1263.8 903 71.9
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1261.9 874 73.3
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1261.5 862 73.0
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1261.1 861 73.2
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1260.7 866 73.0
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1255.4 861 72.8
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1255.4 860 72.9
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1253.0 828 75.8
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1247.6 837 74.0
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1247.3 891 71.9
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1246.1 863 72.7
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1245.3 863 72.8
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1244.6 871 71.1
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1244.2 877 71.9
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1243.0 873 72.7
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1242.3 879 71.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1241.5 861 71.2
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1236.9 863 71.5
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1236.5 866 71.4
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1235.7 863 71.1
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1233.0 867 71.2
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1231.9 854 71.3
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1231.9 867 71.5
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1231.5 858 71.1
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1231.5 855 71.5
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1228.8 854 72.2
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1228.0 871 70.6
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1226.8 860 70.9
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1226.5 830 74.9
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1224.5 873 71.2
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1223.8 913 68.9
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1219.5 890 69.1
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1218.8 854 70.4
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1216.4 871 70.6
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1214.1 909 68.8
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 859 70.5
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1208.0 926 66.7
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1204.5 880 69.0
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1204.5 884 68.3
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 866 70.6
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1202.6 1016 62.8
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 859 70.1
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1198.0 895 67.3
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1192.6 881 67.7
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 867 70.0
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1187.2 882 68.7
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1186.4 893 67.5
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 915 65.0
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 876 68.4
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1184.9 895 67.0
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1184.5 895 67.4
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1183.7 924 66.3
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1182.9 901 67.0
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1182.2 908 66.3
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1181.0 884 67.4
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1177.2 895 67.3
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 821 71.6
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 904 66.5
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1174.8 929 65.3
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1172.5 965 64.2
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1171.4 898 66.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1170.2 901 65.4
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1169.1 843 69.4
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1168.3 865 67.9
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1163.7 884 66.9
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1160.6 859 69.4
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1160.2 891 65.3
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 934 63.0
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 873 65.6
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1156.0 899 65.9
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1156.0 817 71.4
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1155.2 899 65.9
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1154.0 899 65.7
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1150.6 906 65.3
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1148.7 884 66.2
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1147.9 910 64.2
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1146.3 902 65.7
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1145.2 907 65.0
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1139.8 816 69.9
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1139.8 924 64.5
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1137.1 857 67.0
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1134.4 869 67.0
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1129.8 943 61.5
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1121.7 892 65.6
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1119.4 850 67.6
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1114.8 913 63.0
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1113.2 913 62.9
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1100.1 857 65.0
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1097.4 904 63.6
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1094.0 845 64.5
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1091.6 752 71.8
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1083.9 863 65.8
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1082.8 872 66.5
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1075.5 831 64.5
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 8.7e-306 1053.5 717 74.8
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 8.1e-296 1020.4 698 73.2
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 2.3e-290 1002.3 712 70.5
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 2.8e-288 995.3 898 59.1
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 2.4e-279 965.7 875 56.3
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 1.6e-275 953.0 598 78.6
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.1e-271 940.3 719 67.0
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 5.5e-268 927.9 862 58.7
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 2.7e-267 925.6 951 53.9
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 4.8e-264 914.8 913 52.8
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 4.2e-252 875.2 505 82.8
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 3.0e-250 869.0 843 53.4
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 9.1e-247 857.4 689 63.1
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.3e-189 667.5 632 55.4
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 1.6e-174 617.5 530 60.9
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 6.7e-173 612.1 371 78.2
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-171 607.8 384 75.8
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 8.5e-168 595.1 352 82.1
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.3e-165 587.0 341 80.1
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.1e-162 576.6 469 65.0
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.2e-160 570.5 361 75.1
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.1e-157 559.3 540 57.2
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 3.7e-147 526.6 845 39.1
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.6e-145 520.4 706 41.8
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.8e-139 500.4 987 33.4
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.1e-122 445.3 305 72.1
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.7e-110 403.3 450 52.0
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 4.0e-109 400.2 498 47.6
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 3.4e-108 397.1 297 68.4
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.2e-106 390.6 1019 29.2
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 7.5e-100 369.4 595 40.7
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.2e-84 318.9 316 58.2
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 3.4e-68 264.2 165 77.0
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 6.9e-53 213.4 326 43.3
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 2.8e-46 191.4 147 64.6
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.1e-42 179.5 104 79.8
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.0e-37 160.2 106 72.6
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.1e-34 152.9 115 69.6
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.6e-33 147.9 107 65.4
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 7.5e-23 113.6 66 75.8
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.1e-21 109.8 77 70.1
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 1.7e-19 102.4 82 63.4
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.2e-17 96.3 61 70.5
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.5e-15 89.4 97 60.8
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.5e-12 78.2 88 47.7
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 4.5e-12 77.8 57 59.6
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 5.0e-11 74.3 66 56.1
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.1e-10 73.2 53 69.8
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.3e-10 71.6 72 51.4
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.2e-09 69.7 54 61.1
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 8.9e-08 63.5 41 63.4
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 8.9e-08 63.5 47 66.0
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 3.4e-07 61.6 36 80.6


User provided reference genes

Program Settings