Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1909.0 958 100.0
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1420.6 880 80.2
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1411.7 920 76.1
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1400.2 887 77.9
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1397.5 957 74.2
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1395.6 959 72.7
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1390.9 940 74.0
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1385.5 896 75.3
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1384.8 947 73.7
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1384.4 885 76.9
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1383.6 898 75.5
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1381.7 943 73.7
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1377.5 940 74.3
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1376.7 946 74.0
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1376.7 880 77.4
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1371.3 924 73.9
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1370.1 926 73.1
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1368.2 946 73.7
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1368.2 900 75.6
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1360.9 932 73.3
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1360.5 933 74.2
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1355.5 946 72.6
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1354.0 947 72.5
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1350.9 934 73.0
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1350.9 878 75.9
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1346.3 965 70.9
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1341.6 935 72.4
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1341.6 887 74.7
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1340.1 956 71.7
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1340.1 941 71.3
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1337.8 887 74.6
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1337.0 883 75.8
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1337.0 899 74.6
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1336.6 897 74.4
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1336.6 991 69.0
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1335.9 883 75.0
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1332.4 882 75.4
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1326.6 962 71.1
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1324.3 940 71.5
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1322.8 887 73.6
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1322.8 935 71.2
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1322.0 883 73.7
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1322.0 876 75.2
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1321.2 892 74.0
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1320.4 953 70.4
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1320.1 947 70.5
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1320.1 881 74.3
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1318.5 947 70.2
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1315.4 902 72.0
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1315.1 906 72.3
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1314.7 880 74.1
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1313.5 955 70.4
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1310.8 927 70.6
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1309.7 951 71.4
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1308.5 939 70.6
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1296.2 949 70.7
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1295.8 865 74.9
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1283.5 908 72.4
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1277.7 917 70.3
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1276.2 878 73.3
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1275.0 1044 64.9
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1273.8 909 71.3
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1265.8 901 71.3
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1234.9 882 71.5
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1232.2 814 75.8
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1228.8 837 72.8
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1220.3 901 68.0
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1216.8 952 66.3
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1209.9 814 73.2
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1207.6 923 67.6
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1204.9 923 67.7
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1203.0 902 66.7
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1201.8 880 68.0
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1196.4 887 67.0
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1189.5 879 67.7
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1189.1 896 66.7
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1188.3 883 66.4
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1181.4 881 66.7
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1179.1 895 65.7
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1175.2 874 67.0
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1169.5 881 66.1
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1164.8 881 66.1
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1161.0 940 65.3
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1157.1 901 65.0
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1153.3 930 62.6
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1146.0 886 65.0
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1143.3 898 64.5
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1134.8 873 65.2
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1130.9 887 64.1
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1130.5 891 64.8
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1121.3 902 63.9
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1111.7 866 66.5
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1085.5 902 61.3
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 5.0e-310 1067.8 809 66.3
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 7.2e-301 1037.3 789 67.6
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 4.5e-279 964.9 892 54.7
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.6e-271 939.9 946 52.0
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 2.5e-269 932.6 599 76.0
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 4.7e-268 928.3 708 65.4
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.1e-256 890.6 639 71.5
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 2.7e-255 885.9 680 67.4
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 7.5e-250 867.8 607 72.5
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 9.9e-242 840.9 590 73.2
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 3.0e-222 776.2 913 48.4
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 4.8e-204 715.7 559 64.4
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 4.0e-203 712.6 445 78.4
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 1.1e-200 704.5 890 48.1
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 6.7e-198 695.3 521 67.8
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.4e-190 671.0 684 53.2
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 7.4e-189 665.2 415 77.8
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 4.8e-188 662.5 704 50.0
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 1.5e-186 657.5 533 62.9
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 8.3e-164 582.0 397 72.0
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 1.1e-134 485.3 333 73.9
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.9e-124 449.9 269 81.0
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 2.4e-102 377.9 322 62.7
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 3.5e-98 364.0 282 66.3
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.8e-95 354.4 339 58.1
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.6e-82 312.0 216 73.1
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.3e-79 302.4 238 63.9
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 8.8e-65 253.1 172 69.8
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 3.5e-61 241.1 250 52.4
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 3.9e-57 227.6 216 52.3
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.8e-39 168.3 258 45.3
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.7e-37 161.8 96 82.3
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.2e-34 152.9 144 60.4
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 6.2e-26 124.0 411 26.5
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-23 115.5 267 33.3
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 1.6e-21 109.4 82 64.6
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.9e-20 104.8 58 87.9
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 1.9e-19 102.4 59 83.1
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 5.1e-12 77.8 69 56.5
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.4e-08 65.1 145 35.2
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.7e-07 62.8 37 81.1
CBR_g45572 Chara braunii HOM05D000785 ORTHO05D000231 7.1e-06 57.4 71 47.9


User provided reference genes

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