Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 5.9e-52 207.2 102 100.0
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 4.2e-34 147.9 76 88.2
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 9.4e-34 146.7 83 79.5
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 1.6e-33 146.0 82 81.7
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 3.6e-33 144.8 88 76.1
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 3.6e-33 144.8 77 81.8
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 6.1e-33 144.1 82 80.5
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 1.8e-32 142.5 74 86.5
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 1.8e-32 142.5 74 86.5
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 1.8e-32 142.5 83 75.9
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 2.3e-32 142.1 82 79.3
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 3.0e-32 141.7 82 79.3
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 8.8e-32 140.2 82 76.8
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 1.2e-31 139.8 83 75.9
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 2.0e-31 139.0 81 76.5
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 2.6e-31 138.7 83 72.3
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 5.7e-31 137.5 81 75.3
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 7.5e-31 137.1 94 67.0
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 9.8e-31 136.7 83 75.9
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 9.8e-31 136.7 83 75.9
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 9.8e-31 136.7 82 74.4
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 1.7e-30 136.0 80 77.5
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 1.8e-29 132.5 83 72.3
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 3.1e-29 131.7 83 71.1
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 3.1e-29 131.7 83 71.1
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 3.1e-29 131.7 83 71.1
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 3.1e-29 131.7 83 71.1
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 3.1e-29 131.7 83 71.1
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 3.1e-29 131.7 83 71.1
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 3.1e-29 131.7 83 72.3
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.2e-28 129.8 83 67.5
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.2e-28 129.8 83 67.5
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 1.6e-28 129.4 83 68.7
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 2.0e-28 129.0 82 70.7
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 2.0e-28 129.0 75 73.3
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 3.5e-28 128.3 83 68.7
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 4.5e-28 127.9 83 67.5
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 5.9e-28 127.5 83 69.9
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 5.9e-28 127.5 75 73.3
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 1.0e-27 126.7 83 67.5
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 1.0e-27 126.7 83 68.7
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 1.3e-27 126.3 96 60.4
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.3e-27 126.3 90 65.6
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 1.3e-27 126.3 90 65.6
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 1.7e-27 125.9 94 62.8
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.7e-27 125.9 90 64.4
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 2.3e-27 125.6 75 74.7
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 2.9e-27 125.2 74 74.3
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 3.8e-27 124.8 83 67.5
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 5.0e-27 124.4 83 67.5
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 5.0e-27 124.4 94 62.8
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 5.0e-27 124.4 83 66.3
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 5.0e-27 124.4 83 67.5
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 6.5e-27 124.0 83 68.7
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.5e-27 124.0 75 72.0
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.5e-27 124.0 75 72.0
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 6.5e-27 124.0 83 66.3
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 6.5e-27 124.0 90 66.7
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 8.6e-27 123.6 83 66.3
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 8.6e-27 123.6 83 66.3
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 1.1e-26 123.2 81 66.7
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 1.5e-26 122.9 83 69.9
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 1.9e-26 122.5 92 64.1
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 2.5e-26 122.1 83 66.3
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 3.3e-26 121.7 83 65.1
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 5.5e-26 120.9 75 72.0
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 7.2e-26 120.6 83 65.1
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 7.2e-26 120.6 81 64.2
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 7.2e-26 120.6 81 65.4
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 9.5e-26 120.2 74 70.3
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 9.5e-26 120.2 75 69.3
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 1.2e-25 119.8 96 60.4
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 1.2e-25 119.8 96 60.4
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 1.6e-25 119.4 83 63.9
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 2.1e-25 119.0 83 65.1
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 4.7e-25 117.9 99 54.5
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 6.1e-25 117.5 83 62.7
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 8.0e-25 117.1 90 62.2
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 8.0e-25 117.1 83 62.7
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 1.8e-24 115.9 80 62.5
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 4.0e-24 114.8 83 60.2
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 6.8e-24 114.0 83 61.4
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 8.9e-24 113.6 100 57.0
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 4.4e-23 111.3 83 61.4
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 4.4e-23 111.3 83 59.0
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 9.8e-23 110.2 91 57.1
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 4.9e-22 107.8 83 56.6
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.4e-21 106.3 75 61.3
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 3.1e-21 105.1 77 59.7
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 7.0e-21 104.0 59 74.6
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 3.5e-20 101.7 81 51.9
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 3.5e-20 101.7 81 51.9
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 1.3e-19 99.8 61 68.9
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 3.8e-19 98.2 59 64.4
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.9e-18 95.9 83 54.2
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 4.7e-17 91.3 89 49.4
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 8.9e-16 87.0 83 47.0
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 2.2e-14 82.4 84 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 1.6e-12 76.3 67 49.3
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 7.8e-12 73.9 66 53.0
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 9.5e-10 67.0 63 44.4
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 6.2e-09 64.3 66 43.9
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 8.9e-08 60.5 56 50.0
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 8.9e-08 60.5 65 43.1
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.2e-07 60.1 58 39.7
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 3.4e-07 58.5 54 46.3
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 7.5e-07 57.4 54 46.3
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 2.9e-06 55.5 53 43.4
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 4.9e-06 54.7 51 49.0
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 8.3e-06 53.9 54 40.7


User provided reference genes

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