Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 1.2e-205 719.5 353 100.0
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.0e-159 567.0 347 77.2
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.5e-158 562.4 347 77.5
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 9.5e-158 560.5 351 76.6
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 9.5e-158 560.5 351 76.9
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 4.0e-156 555.1 348 76.7
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 1.2e-155 553.5 338 78.1
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 1.2e-155 553.5 348 76.4
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 7.5e-155 550.8 350 76.0
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 1.3e-154 550.1 348 75.6
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 1.7e-154 549.7 347 76.1
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 4.0e-148 528.5 349 71.9
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 1.5e-147 526.6 370 70.8
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 3.2e-145 518.8 347 70.9
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 4.6e-144 515.0 405 64.4
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 1.7e-143 513.1 348 71.6
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 2.5e-142 509.2 350 71.4
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 1.6e-141 506.5 350 70.0
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.1e-141 506.1 349 70.5
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 1.4e-140 503.4 347 69.5
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.3e-140 502.7 359 67.4
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 1.2e-139 500.4 349 70.5
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 2.6e-139 499.2 351 67.2
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 3.4e-139 498.8 349 70.2
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 5.8e-139 498.0 335 72.2
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 2.2e-138 496.1 355 69.0
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 3.7e-138 495.4 376 66.5
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 7.1e-137 491.1 364 65.4
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 1.2e-136 490.3 355 65.1
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 2.7e-136 489.2 364 65.1
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 4.6e-136 488.4 347 68.6
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 1.7e-130 469.9 351 63.8
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 3.8e-130 468.8 365 62.5
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 3.8e-130 468.8 357 64.1
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 6.4e-130 468.0 356 63.2
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 1.1e-129 467.2 350 63.7
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 1.4e-129 466.8 338 66.9
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 7.1e-129 464.5 349 65.6
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 1.2e-128 463.8 343 64.1
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 1.2e-128 463.8 340 66.8
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 6.0e-128 461.5 359 63.5
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 1.3e-127 460.3 355 64.8
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 2.5e-126 456.1 390 58.5
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 4.7e-125 451.8 350 62.3
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 3.1e-124 449.1 351 62.4
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 4.0e-124 448.7 349 60.7
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 8.9e-124 447.6 349 60.7
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 8.9e-124 447.6 349 60.7
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 1.2e-123 447.2 358 60.9
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 2.6e-123 446.0 349 60.5
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 3.4e-123 445.7 348 61.2
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 1.3e-122 443.7 355 60.6
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.2e-122 443.0 369 59.1
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 2.2e-122 443.0 355 60.6
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 3.8e-122 442.2 353 60.1
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 4.9e-122 441.8 349 59.9
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 4.9e-122 441.8 349 59.9
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 1.4e-121 440.3 380 57.1
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 4.2e-121 438.7 295 69.8
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 9.3e-121 437.6 348 60.9
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 9.3e-121 437.6 339 60.8
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 2.7e-120 436.0 348 59.2
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 3.5e-120 435.6 352 59.1
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 1.1e-118 430.6 348 59.8
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 1.5e-118 430.3 354 59.3
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 7.3e-118 427.9 347 59.7
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.6e-117 426.8 346 59.8
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 3.4e-115 419.1 346 58.7
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 2.2e-114 416.4 356 58.7
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 5.1e-111 405.2 354 57.9
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 8.7e-111 404.4 367 55.9
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 9.6e-110 401.0 347 56.5
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 8.1e-109 397.9 348 56.6
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 2.2e-106 389.8 347 54.5
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 6.4e-106 388.3 347 54.2
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 4.2e-105 385.6 347 54.2
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.8e-101 372.9 353 52.7
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 3.7e-101 372.5 353 52.1
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 9.0e-100 367.9 349 54.2
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 4.8e-93 345.5 268 61.6
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 4.8e-93 345.5 382 52.4
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 6.3e-93 345.1 308 55.2
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.3e-93 345.1 348 52.6
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.3e-93 345.1 348 52.6
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 1.8e-92 343.6 249 65.9
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.5e-91 340.5 332 50.6
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.0e-87 327.8 344 47.7
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 8.2e-85 318.2 373 44.5
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 5.0e-82 308.9 258 58.9
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 2.7e-80 303.1 355 41.7
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 6.1e-80 302.0 341 44.6
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 1.3e-77 294.3 186 74.2
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 1.7e-77 293.9 183 73.2
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 9.1e-76 288.1 419 38.4
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 2.9e-66 256.5 185 65.9
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 3.3e-62 243.0 186 59.7
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 9.1e-52 208.4 138 72.5
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.3e-50 204.5 312 38.1
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 2.3e-50 203.8 131 73.3
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 9.5e-49 198.4 147 58.5
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 6.1e-48 195.7 167 62.3
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 2.3e-47 193.7 167 61.7
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 6.8e-47 192.2 167 61.1
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 4.4e-46 189.5 106 82.1
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 9.8e-46 188.3 144 65.3
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.3e-42 177.9 125 67.2
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 3.8e-42 176.4 117 69.2
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.1e-41 174.9 125 62.4
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 5.6e-41 172.6 88 95.5
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 4.7e-40 169.5 126 68.3
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 5.2e-39 166.0 152 52.0
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 9.8e-38 161.8 120 61.7
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 2.3e-31 140.6 85 75.3
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 2.9e-29 133.7 89 65.2
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 9.5e-25 118.6 108 49.1
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.2e-24 118.2 80 61.2
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 2.1e-24 117.5 152 39.5
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 6.4e-21 105.9 116 50.0
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 7.6e-14 82.4 167 30.5
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 6.4e-13 79.3 53 66.0
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 6.4e-13 79.3 81 48.1
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 3.2e-12 77.0 51 62.7
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 4.6e-11 73.2 61 60.7
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 2.3e-10 70.9 83 43.4
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 3.3e-09 67.0 42 66.7
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 1.6e-08 64.7 42 64.3
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 2.8e-08 63.9 63 44.4
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 3.6e-08 63.5 73 39.7
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 4.7e-08 63.2 63 44.4
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 6.9e-07 59.3 42 61.9
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.5e-06 58.2 37 62.2
C05p13980 Brassica napus HOM05D000840 ORTHO05D000670 9.9e-06 55.5 40 62.5


User provided reference genes

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