Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 1.1e-69 266.5 139 100.0
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 3.0e-59 231.9 139 83.5
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 6.8e-59 230.7 140 84.3
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.2e-58 229.9 140 85.0
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 2.6e-58 228.8 139 85.6
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 5.7e-58 227.6 140 82.1
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 5.7e-58 227.6 140 82.9
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 7.5e-58 227.3 140 82.1
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 2.8e-57 225.3 139 86.3
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 3.7e-57 224.9 140 85.0
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.9e-57 224.6 138 84.8
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 6.3e-57 224.2 140 81.4
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 8.3e-57 223.8 140 82.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.1e-56 223.4 140 83.6
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.1e-56 223.4 140 83.6
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 5.4e-56 221.1 140 80.7
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 7.0e-56 220.7 140 82.1
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 9.1e-56 220.3 140 82.1
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.2e-55 219.9 141 83.0
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.6e-55 219.5 141 83.0
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.6e-55 219.5 140 82.9
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.6e-55 219.5 140 82.9
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 1.6e-55 219.5 140 82.9
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.0e-55 219.2 140 83.6
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 2.7e-55 218.8 140 81.4
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 3.5e-55 218.4 140 83.6
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 4.5e-55 218.0 140 82.1
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.7e-55 217.2 141 81.6
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 7.7e-55 217.2 141 81.6
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.3e-54 216.5 137 82.5
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.7e-54 216.1 139 81.3
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.7e-54 216.1 140 82.1
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 82.1
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 81.4
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 81.4
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 2.9e-54 215.3 140 80.0
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.9e-54 215.3 140 80.0
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.9e-54 215.3 140 80.0
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 2.9e-54 215.3 140 80.7
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 3.8e-54 214.9 141 80.9
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 5.0e-54 214.5 140 80.7
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 6.6e-54 214.2 142 79.6
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 6.6e-54 214.2 140 80.0
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 8.6e-54 213.8 140 77.9
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.6e-54 213.8 137 82.5
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 8.6e-54 213.8 140 80.0
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.9e-53 212.6 141 81.6
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.9e-53 212.6 141 80.1
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.9e-53 212.6 142 81.7
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 4.3e-53 211.5 141 79.4
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 4.3e-53 211.5 140 77.1
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 7.2e-53 210.7 141 77.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.2e-52 209.9 140 79.3
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.6e-52 209.5 134 81.3
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 81.6
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.8e-52 208.8 140 77.9
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 8.0e-52 207.2 141 75.9
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.0e-51 206.8 140 77.1
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.0e-51 206.8 140 78.6
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.4e-51 206.5 139 79.1
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 3.0e-51 205.3 140 76.4
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 4.0e-51 204.9 140 76.4
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 5.2e-51 204.5 137 81.0
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.2e-51 204.5 141 79.4
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.2e-51 204.5 141 79.4
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 8.9e-51 203.8 139 76.3
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 8.9e-51 203.8 139 76.3
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-50 203.4 140 75.7
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 75.9
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 2.0e-50 202.6 135 78.5
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 3.4e-50 201.8 141 75.9
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 5.7e-50 201.1 139 74.8
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 5.7e-50 201.1 139 74.8
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 5.7e-50 201.1 139 74.8
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 5.7e-50 201.1 139 74.8
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.7e-50 201.1 140 76.4
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 9.8e-50 200.3 140 75.7
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.8e-50 200.3 140 75.0
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 9.8e-50 200.3 140 75.7
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 74.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 74.8
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 74.8
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.7e-49 199.5 140 75.7
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 74.8
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 74.8
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 74.8
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.7e-49 199.5 140 75.7
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 1.7e-49 199.5 140 75.7
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 74.3
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.2e-49 199.1 143 71.3
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 75.2
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 3.7e-49 198.4 142 76.1
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 3.7e-49 198.4 140 75.0
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 3.7e-49 198.4 140 75.0
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 3.7e-49 198.4 140 75.0
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 3.7e-49 198.4 139 73.4
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 3.7e-49 198.4 140 73.6
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 4.9e-49 198.0 140 74.3
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 4.9e-49 198.0 140 74.3
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 6.4e-49 197.6 141 75.2
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 8.3e-49 197.2 140 77.9
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.1e-48 196.8 134 77.6
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.4e-48 196.4 144 72.9
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.4e-48 196.4 140 77.1
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.4e-48 196.4 140 73.6
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.2e-48 195.3 144 72.2
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 75.9
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.1e-48 194.9 139 74.8
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 5.4e-48 194.5 140 75.0
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 5.4e-48 194.5 140 75.7
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 9.2e-48 193.7 139 77.0
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 75.2
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.6e-47 193.0 155 69.0
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.6e-47 193.0 140 75.7
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.5e-47 191.8 140 72.9
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 4.6e-47 191.4 141 72.3
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.8e-47 190.7 141 75.2
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 1.7e-46 189.5 141 73.0
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.0e-46 188.7 142 73.9
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 3.9e-46 188.3 140 72.1
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 5.0e-46 188.0 131 73.3
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 2.5e-45 185.7 140 72.9
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.1e-44 182.6 139 68.3
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 6.2e-44 181.0 134 73.9
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.0e-43 180.3 140 72.1
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.3e-43 179.1 140 70.0
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.3e-43 179.1 137 67.9
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 4.0e-43 178.3 137 68.6
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 8.9e-43 177.2 140 69.3
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 8.9e-43 177.2 140 69.3
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.2e-42 176.8 140 68.6
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.6e-42 175.6 140 67.1
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 3.7e-41 171.8 137 67.9
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.4e-40 167.9 138 65.2
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.6e-39 166.4 109 76.1
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 2.7e-39 165.6 88 92.0
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 3.9e-38 161.8 139 64.0
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 3.9e-38 161.8 139 63.3
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 5.0e-38 161.4 91 87.9
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.9e-37 159.5 159 61.0
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.5e-37 159.1 153 64.7
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 7.3e-37 157.5 138 60.9
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.6e-36 155.2 141 61.0
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 2.3e-35 152.5 138 58.7
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.9e-33 145.6 147 57.1
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 6.4e-33 144.4 114 65.8
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 8.3e-33 144.1 140 60.0
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 3.5e-31 138.7 119 61.3
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 6.0e-31 137.9 137 59.1
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-29 133.7 139 54.7
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 1.9e-29 132.9 90 82.2
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 2.5e-29 132.5 90 80.0
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.1e-28 129.4 146 51.4
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.2e-28 127.9 118 60.2
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.2e-28 127.9 140 52.9
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.1e-27 127.1 147 53.7
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.2e-26 123.6 140 50.7
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 4.9e-25 118.2 82 76.8
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 3.9e-22 108.6 138 44.2
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 4.3e-21 105.1 53 90.6
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 5.2e-19 98.2 140 47.1
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 2.6e-18 95.9 67 64.2
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 1.3e-14 83.6 80 53.8
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 8.7e-14 80.9 81 64.2
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.1e-13 80.5 74 67.6
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 2.4e-08 62.8 135 38.5


User provided reference genes

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