Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 0.0e+00 1269.6 731 100.0
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 3.3e-282 974.9 771 76.9
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 1.7e-273 946.0 784 73.3
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.2e-273 945.7 751 78.2
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 5.0e-270 934.5 763 75.2
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 6.5e-270 934.1 794 62.7
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 4.0e-267 924.9 639 74.5
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 8.8e-267 923.7 843 68.7
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.8e-264 916.0 758 74.0
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.9e-262 908.7 755 75.5
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.8e-262 908.3 737 76.0
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 5.0e-262 907.9 739 75.9
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.8e-259 899.4 782 61.9
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 3.0e-259 898.7 747 74.7
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 5.2e-259 897.9 753 75.3
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.5e-258 896.3 749 74.0
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.8e-257 892.1 752 74.3
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 7.0e-256 887.5 749 73.6
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.6e-255 886.3 749 73.6
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.3e-254 882.5 632 72.3
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 5.0e-254 881.3 774 70.5
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 6.1e-252 874.4 754 73.2
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.8e-251 872.8 762 73.6
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.3e-249 866.7 747 74.2
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 2.9e-249 865.5 751 74.2
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 3.7e-249 865.1 750 74.5
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.7e-249 865.1 740 73.9
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.4e-248 863.2 787 61.1
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 7.0e-248 860.9 755 73.1
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-247 860.1 748 73.8
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-247 860.1 748 73.8
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 2.7e-247 859.0 752 72.5
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.9e-246 855.1 740 73.0
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 5.6e-245 851.3 777 71.4
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.2e-244 850.1 755 73.1
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.2e-244 850.1 755 72.7
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 3.6e-244 848.6 786 68.7
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 4.7e-244 848.2 746 73.3
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 6.2e-244 847.8 750 71.7
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.8e-243 846.3 743 73.1
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.3e-243 845.9 747 72.4
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 6.8e-243 844.3 748 72.5
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.0e-242 842.8 744 72.8
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 3.4e-242 842.0 744 73.0
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 3.7e-241 838.6 756 72.1
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 4.9e-241 838.2 759 70.5
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 8.3e-241 837.4 766 70.9
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 5.4e-240 834.7 745 73.0
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 7.0e-240 834.3 751 71.8
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.5e-239 832.0 754 70.7
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.0e-238 830.5 745 70.3
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.3e-238 829.3 744 70.8
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.9e-238 828.6 753 71.3
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 3.9e-238 828.6 828 66.4
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.1e-237 827.0 754 71.4
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.1e-237 827.0 766 70.5
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.3e-237 824.3 754 70.4
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.1e-235 820.5 758 70.8
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.8e-235 819.7 766 70.0
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 1.2e-234 817.0 744 71.6
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 1.5e-234 816.6 757 68.0
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 2.0e-234 816.2 791 68.8
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.3e-233 813.5 744 70.0
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.7e-233 813.1 751 71.1
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 1.1e-232 810.4 756 70.5
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 1.9e-232 809.7 751 70.7
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.4e-232 809.3 751 70.7
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.1e-232 808.5 779 68.4
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.1e-232 807.7 751 70.6
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 7.1e-232 807.7 745 70.7
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 3.5e-231 805.4 755 69.9
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-230 802.4 751 70.4
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.0e-230 802.4 751 70.0
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 5.1e-230 801.6 680 74.4
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.1e-230 801.6 751 70.4
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 3.6e-228 795.4 750 70.4
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 3.6e-228 795.4 760 69.9
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 2.4e-224 782.7 637 65.6
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 6.6e-222 774.6 744 67.1
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 4.7e-220 768.5 745 67.1
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.4e-219 766.9 759 67.6
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 6.8e-219 764.6 739 68.1
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 6.8e-219 764.6 770 65.6
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 8.9e-219 764.2 739 67.7
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.2e-218 763.8 742 66.8
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 5.8e-218 761.5 741 67.5
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 5.8e-218 761.5 779 65.1
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 9.9e-218 760.8 744 67.6
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 9.9e-218 760.8 754 67.5
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.7e-217 760.0 770 55.6
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 3.8e-217 758.8 771 59.0
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.4e-216 756.1 745 67.2
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.0e-214 750.7 738 67.5
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.3e-214 749.6 746 67.3
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 6.6e-214 748.0 839 62.5
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.5e-213 746.9 739 67.1
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 7.3e-213 744.6 741 66.8
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.8e-211 740.0 745 67.0
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 5.8e-210 734.9 741 66.3
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 2.9e-209 732.6 741 66.0
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 6.4e-201 704.9 742 65.6
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 4.3e-197 692.2 746 65.4
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 2.1e-191 673.3 775 60.5
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 3.7e-188 662.5 788 61.7
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.8e-187 660.2 742 59.7
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 1.8e-182 643.7 722 60.8
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.2e-180 636.7 547 75.3
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 3.1e-179 632.9 563 62.7
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 6.3e-172 608.6 1248 42.1
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 2.2e-161 573.5 768 54.4
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 5.3e-155 552.4 534 56.4
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.3e-153 547.7 451 63.0
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.7e-153 547.4 773 54.6
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.4e-150 537.7 755 56.3
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 2.8e-148 530.0 761 55.6
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 8.5e-145 518.5 761 54.8
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 6.1e-143 512.3 761 53.4
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.7e-132 477.6 440 57.5
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 5.6e-112 409.5 647 41.3
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 7.8e-106 389.0 363 80.2
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.7e-105 387.9 360 80.8
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.6e-104 382.9 378 56.1
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.6e-103 380.2 388 77.3
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 4.3e-96 356.7 304 89.5
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 5.6e-88 329.7 374 51.6
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.1e-82 311.2 334 55.7
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.1e-74 284.6 743 33.1
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-69 268.5 313 50.5
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.0e-68 265.8 491 38.1
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 6.5e-68 263.1 196 65.8
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 9.3e-67 259.2 847 39.2
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.4e-62 244.6 162 73.5
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 8.8e-57 226.1 147 78.9
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 2.0e-56 224.9 693 30.7
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 2.0e-53 214.9 485 34.0
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.5e-40 169.9 232 44.8
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-39 169.1 98 84.7
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.1e-35 156.0 229 42.8
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-35 155.2 92 80.4
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 5.2e-33 147.1 146 54.8
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-32 145.6 83 84.3
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.5e-32 145.6 189 48.7
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.5e-32 143.3 229 39.3
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.3e-31 139.8 84 82.1
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.8e-30 138.7 82 79.3
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 2.4e-30 138.3 145 52.4
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 4.5e-29 134.0 105 63.8
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.3e-28 132.5 124 62.1
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-26 125.2 67 83.6
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 1.7e-23 115.5 93 63.4
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.8e-23 114.8 69 79.7
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 8.3e-23 113.2 93 61.3
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-22 111.3 61 85.2
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.0e-22 110.2 61 83.6
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-21 109.0 101 57.4
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 2.7e-21 108.2 127 55.1
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.5e-19 101.7 59 81.4
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 8.0e-18 96.7 155 91.0
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.8e-17 95.5 111 51.4
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 1.5e-16 92.4 150 91.3
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-14 85.9 173 37.0
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.1e-11 76.3 232 29.7
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-11 76.3 100 44.0
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.7e-10 70.9 59 64.4
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.2e-10 70.5 50 62.0
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 8.9e-09 66.6 136 39.7
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 2.0e-08 65.5 92 44.6
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 4.4e-08 64.3 54 57.4
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-06 58.9 30 90.0
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 1.9e-06 58.9 43 65.1
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.0e-06 57.0 29 89.7
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 7.0e-06 57.0 30 86.7
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 9.2e-06 56.6 30 83.3


User provided reference genes

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