Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 1.9e-99 365.9 191 100.0
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 2.6e-69 265.8 191 74.3
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 1.7e-68 263.1 191 74.3
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.1e-67 260.4 191 72.8
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 3.2e-67 258.8 191 73.8
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 4.2e-67 258.5 191 73.8
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.0e-65 253.8 191 71.2
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 4.3e-64 248.4 203 72.4
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 4.3e-64 248.4 204 71.1
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 1.8e-62 243.0 189 69.8
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 3.1e-62 242.3 191 73.3
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 5.3e-62 241.5 203 67.0
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 4.5e-61 238.4 201 68.2
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 4.5e-61 238.4 200 69.0
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 1.3e-60 236.9 214 66.8
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.3e-60 236.9 193 69.4
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 1.7e-60 236.5 192 71.4
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 3.8e-60 235.3 211 65.9
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 3.8e-60 235.3 193 69.9
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.9e-60 235.0 202 68.3
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 1.1e-59 233.8 211 65.4
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.1e-59 233.8 211 65.4
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 1.1e-59 233.8 207 66.7
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 1.9e-59 233.0 208 65.4
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.9e-59 233.0 203 63.5
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 3.2e-59 232.3 200 67.0
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 4.2e-59 231.9 210 65.7
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 4.2e-59 231.9 196 68.9
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 4.2e-59 231.9 195 67.2
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 4.2e-59 231.9 214 63.6
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 5.5e-59 231.5 193 68.4
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 9.3e-59 230.7 195 67.2
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 9.3e-59 230.7 205 67.3
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 1.2e-58 230.3 195 66.7
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 1.2e-58 230.3 209 64.1
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.6e-58 229.9 202 66.8
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 1.6e-58 229.9 208 65.4
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.1e-58 229.6 198 67.2
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.1e-58 229.6 198 67.2
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.1e-58 229.6 198 67.2
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 2.1e-58 229.6 192 68.2
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 2.7e-58 229.2 199 65.3
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.7e-58 229.2 195 66.7
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 2.7e-58 229.2 201 67.7
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 4.6e-58 228.4 192 68.8
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 6.0e-58 228.0 196 69.9
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 7.9e-58 227.6 204 63.7
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 1.0e-57 227.3 209 65.6
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 1.0e-57 227.3 207 63.8
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.8e-57 226.5 191 67.0
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.8e-57 226.5 199 64.3
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 1.8e-57 226.5 203 65.0
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 1.8e-57 226.5 210 62.9
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 2.3e-57 226.1 207 63.3
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 3.0e-57 225.7 199 67.8
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 3.9e-57 225.3 201 67.7
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 3.9e-57 225.3 201 67.7
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.9e-57 225.3 195 65.1
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 3.9e-57 225.3 201 64.7
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 5.1e-57 224.9 210 63.8
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 5.1e-57 224.9 193 67.4
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 6.7e-57 224.6 197 67.5
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 6.7e-57 224.6 204 64.2
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 8.7e-57 224.2 195 65.6
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 8.7e-57 224.2 201 67.2
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 1.1e-56 223.8 195 65.1
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 1.1e-56 223.8 195 65.1
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.1e-56 223.8 191 66.0
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 1.1e-56 223.8 193 66.3
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.5e-56 223.4 204 66.2
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.9e-56 223.0 199 64.8
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.9e-56 223.0 199 64.8
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.9e-56 223.0 201 67.2
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 1.9e-56 223.0 210 65.2
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 2.5e-56 222.6 195 65.6
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 2.5e-56 222.6 193 64.8
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 2.5e-56 222.6 206 65.5
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 3.3e-56 222.2 197 63.5
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 3.3e-56 222.2 206 63.1
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 5.6e-56 221.5 193 65.3
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 5.6e-56 221.5 192 67.2
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 5.6e-56 221.5 201 65.2
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 9.6e-56 220.7 198 65.2
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 9.6e-56 220.7 191 64.9
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 9.6e-56 220.7 211 62.6
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 9.6e-56 220.7 212 65.1
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 1.3e-55 220.3 193 63.2
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 1.6e-55 219.9 199 63.8
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 2.1e-55 219.5 206 62.1
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 2.1e-55 219.5 209 62.2
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 2.8e-55 219.2 197 62.9
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 2.8e-55 219.2 193 61.7
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 2.8e-55 219.2 197 62.9
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 3.7e-55 218.8 193 62.2
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 3.7e-55 218.8 196 62.2
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 3.7e-55 218.8 194 65.5
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 4.8e-55 218.4 204 61.8
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 4.8e-55 218.4 145 75.2
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 4.8e-55 218.4 193 65.3
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 4.8e-55 218.4 211 62.1
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 6.2e-55 218.0 207 61.8
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 8.1e-55 217.6 200 63.5
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 1.1e-54 217.2 203 63.1
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 1.4e-54 216.9 191 63.4
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.4e-54 216.1 199 62.8
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 3.1e-54 215.7 208 62.0
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 3.1e-54 215.7 203 63.5
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 4.0e-54 215.3 192 63.0
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 4.0e-54 215.3 192 62.5
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.9e-54 214.5 203 63.5
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.9e-54 214.5 203 63.5
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 6.9e-54 214.5 203 63.5
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 9.0e-54 214.2 196 64.3
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 9.0e-54 214.2 205 61.5
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 9.0e-54 214.2 201 63.7
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.2e-53 213.8 119 86.6
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.0e-53 213.0 197 64.0
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 2.6e-53 212.6 203 60.1
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 7.6e-53 211.1 104 97.1
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 7.6e-53 211.1 194 63.4
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 1.0e-52 210.7 186 63.4
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.7e-52 209.9 202 61.9
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 3.8e-52 208.8 104 96.2
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 4.9e-52 208.4 110 90.9
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 6.5e-52 208.0 104 96.2
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 1.1e-51 207.2 176 65.3
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 1.4e-51 206.8 104 95.2
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 4.2e-51 205.3 193 62.2
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 7.1e-51 204.5 112 86.6
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 2.1e-50 203.0 182 63.2
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 2.7e-50 202.6 104 92.3
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 4.6e-50 201.8 195 61.0
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 2.5e-48 196.1 176 63.1
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 3.3e-48 195.7 109 87.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 4.1e-46 188.7 100 88.0
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 9.0e-46 187.6 103 89.3
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 5.0e-44 181.8 207 54.6
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 2.1e-42 176.4 100 83.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.6e-42 175.6 130 66.9
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.3e-41 173.7 111 74.8
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 5.1e-41 171.8 189 54.0
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.1e-38 164.1 190 51.1
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 3.4e-37 159.1 101 75.2
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 5.9e-37 158.3 148 62.2
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 2.9e-36 156.0 101 70.3
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 6.7e-33 144.8 107 62.6
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 5.3e-30 135.2 99 63.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 9.7e-24 114.4 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 1.0e-20 104.4 100 49.0
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 2.2e-07 60.1 194 34.5
Aqoxy5G01460 Aquilegia oxysepala HOM05D001946 ORTHO05D002111 9.1e-06 54.7 101 32.7


User provided reference genes

Program Settings