Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 0.0e+00 1535.4 800 100.0
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.6e-221 773.5 827 53.3
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 9.8e-219 764.2 777 55.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.9e-202 709.5 840 49.2
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 8.3e-202 708.0 788 50.8
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.3e-199 699.9 819 48.6
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 6.6e-199 698.4 819 48.5
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 8.6e-199 698.0 817 49.6
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 2.1e-197 693.3 824 48.7
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.7e-194 682.6 838 47.7
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.4e-193 679.9 782 50.3
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 2.7e-192 676.4 795 48.6
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 8.6e-191 671.4 822 47.1
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.9e-190 670.2 742 50.1
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.2e-188 662.1 814 47.8
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 5.8e-187 658.7 814 47.7
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 3.8e-186 656.0 826 47.0
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.9e-182 643.7 871 46.2
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.5e-182 643.3 811 47.2
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.3e-182 642.9 829 46.9
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.5e-179 634.0 829 46.8
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.4e-177 627.5 799 46.9
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 3.2e-177 626.3 856 46.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.3e-172 609.0 779 46.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.2e-170 603.6 764 47.8
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 7.9e-168 595.1 801 44.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.9e-166 590.5 794 45.1
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 4.5e-163 579.3 850 44.1
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 9.9e-163 578.2 837 44.2
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.5e-158 563.5 786 43.8
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 9.6e-158 561.6 796 43.2
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.4e-156 557.0 845 42.1
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 5.3e-156 555.8 823 42.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 5.3e-156 555.8 823 42.3
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.9e-156 555.4 858 41.6
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.9e-156 555.4 801 42.9
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 9.0e-156 555.1 827 43.4
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.6e-155 553.5 822 41.6
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 4.2e-153 546.2 842 41.0
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 5.5e-153 545.8 799 43.1
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.7e-152 543.5 822 41.7
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 3.0e-151 540.0 727 47.0
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.5e-150 537.7 839 39.6
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 4.8e-149 532.7 810 41.7
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 6.9e-148 528.9 799 40.6
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 6.9e-148 528.9 773 41.3
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 2.0e-147 527.3 795 40.9
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.1e-145 521.5 722 46.1
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.5e-145 520.4 829 41.3
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.2e-144 518.1 813 41.1
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.1e-144 517.3 847 39.7
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 5.1e-143 512.7 785 41.5
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.5e-142 511.1 879 38.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.0e-142 510.8 772 41.3
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 3.3e-142 510.0 796 39.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 3.7e-141 506.5 796 39.3
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 4.1e-140 503.1 788 39.8
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 2.6e-139 500.4 794 40.2
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.6e-139 500.4 796 40.7
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 3.4e-139 500.0 946 36.7
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 7.7e-139 498.8 782 40.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 6.5e-138 495.7 792 40.5
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.1e-137 495.0 993 36.0
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.4e-137 494.6 834 38.7
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 9.4e-137 491.9 838 38.5
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.2e-136 491.5 792 38.5
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 6.1e-136 489.2 1028 35.1
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.0e-135 488.4 792 39.4
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 3.0e-135 486.9 912 36.5
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 3.7e-133 479.9 807 37.5
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.6e-131 473.8 798 37.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 2.2e-130 470.7 890 36.6
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.0e-130 469.5 830 37.0
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 8.5e-130 468.8 787 37.5
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.7e-128 463.8 830 37.1
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.8e-127 461.1 905 35.7
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 6.7e-127 459.1 798 37.6
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.8e-125 453.8 834 36.1
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.1e-124 450.3 767 39.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 4.1e-124 449.9 812 37.6
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.2e-122 444.1 811 37.4
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 3.7e-117 426.8 795 36.9
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.1e-116 423.3 950 34.0
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.4e-111 408.3 809 34.6
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 2.3e-111 407.5 802 34.8
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 3.0e-111 407.1 774 34.8
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.5e-110 404.8 799 35.5
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.1e-108 398.7 771 34.5
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 4.1e-108 396.7 799 35.7
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 4.1e-108 396.7 858 36.0
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.5e-107 393.7 555 42.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 6.6e-106 389.4 766 34.1
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 4.7e-104 383.3 778 34.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.3e-101 375.2 792 34.7
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.4e-100 371.7 661 37.7
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 3.1e-95 354.0 741 34.1
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.4e-92 344.4 525 44.8
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.3e-90 338.6 845 32.0
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.6e-86 324.3 584 37.8
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 4.1e-84 317.0 493 38.5
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.7e-83 314.3 618 35.6
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 9.5e-81 305.8 664 35.2
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 5.4e-76 290.0 829 29.0
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 7.8e-75 286.2 637 35.9
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.3e-74 285.4 406 45.6
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.0e-74 284.3 725 30.9
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 2.1e-72 278.1 651 32.7
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.6e-70 271.2 471 38.0
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 9.9e-70 269.2 738 30.6
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 9.9e-70 269.2 766 29.1
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.3e-69 268.9 554 35.0
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.9e-69 267.7 497 35.2
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 8.4e-69 266.2 446 38.6
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 3.2e-68 264.2 599 33.1
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 3.2e-68 264.2 488 34.2
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.5e-65 255.4 500 36.2
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.5e-65 254.6 445 36.9
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.6e-64 251.9 444 36.9
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.2e-64 250.0 447 34.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 5.8e-62 243.4 444 34.9
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 5.8e-62 243.4 489 34.4
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 5.8e-62 243.4 444 34.9
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 9.9e-62 242.7 610 32.6
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.9e-61 241.1 486 33.7
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.4e-60 238.8 442 35.1
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 4.2e-60 237.3 613 33.6
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.6e-59 235.3 617 31.6
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.1e-59 235.0 516 33.7
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.7e-59 234.6 350 38.3
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.0e-58 232.6 614 33.2
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.0e-58 232.6 270 51.9
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 3.0e-58 231.1 616 33.0
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.3e-56 225.7 611 30.8
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 4.8e-56 223.8 626 33.1
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 4.8e-56 223.8 626 33.1
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.8e-54 216.9 437 33.6
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 5.4e-52 210.3 617 32.4
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 9.3e-52 209.5 800 26.2
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.8e-47 195.3 831 25.0
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.6e-46 191.4 452 30.1
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.5e-44 184.9 463 33.5
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.6e-43 182.2 283 43.5
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.1e-39 169.5 469 31.6
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.8e-39 168.7 192 51.6
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.8e-39 168.7 469 27.3
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 7.2e-36 156.8 105 63.8
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 6.7e-34 150.2 128 60.2
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 5.9e-30 137.1 430 24.7
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.7e-29 135.6 822 22.7
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.4e-28 132.5 100 55.0
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.0e-26 124.8 426 30.0
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 3.3e-25 121.3 362 31.8
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.6e-19 101.3 713 22.2
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 7.4e-17 93.6 143 31.5
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.9e-14 84.0 103 47.6
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 7.2e-12 77.0 83 49.4
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 3.3e-09 68.2 50 66.0
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 3.3e-09 68.2 64 51.6
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 9.7e-09 66.6 77 39.0
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 9.7e-09 66.6 73 38.4
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.6e-06 59.3 171 25.7


User provided reference genes

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