Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 2.8e-277 958.4 629 100.0
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 4.2e-84 316.6 681 47.4
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 4.0e-82 310.1 666 51.5
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.5e-81 308.1 723 49.1
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 5.7e-81 306.2 718 50.7
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.0e-78 297.7 658 48.0
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 5.0e-77 293.1 586 54.8
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 5.0e-77 293.1 641 45.4
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 4.0e-74 283.5 401 48.4
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 7.5e-73 279.3 391 48.6
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 1.4e-71 275.0 672 50.4
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 4.6e-70 270.0 414 45.9
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 1.9e-68 264.6 633 46.0
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 2.5e-68 264.2 638 46.9
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 9.5e-68 262.3 707 46.4
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 1.2e-67 261.9 652 42.3
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.6e-67 261.5 744 45.3
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 2.1e-67 261.2 712 47.1
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 2.1e-67 261.2 399 45.6
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 6.2e-67 259.6 708 45.6
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 2.6e-65 254.2 381 45.9
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 3.4e-65 253.8 424 42.7
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 3.4e-65 253.8 404 45.8
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 5.8e-65 253.1 672 45.5
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 7.5e-65 252.7 692 37.4
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 1.7e-64 251.5 687 43.8
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 3.7e-64 250.4 675 38.1
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 3.7e-64 250.4 754 47.1
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 4.9e-64 250.0 654 47.7
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 8.3e-64 249.2 411 45.5
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 1.2e-62 245.4 438 42.2
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 6.0e-62 243.0 381 46.5
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 1.0e-61 242.3 442 40.0
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 3.9e-61 240.4 433 42.3
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 5.6e-60 236.5 695 39.9
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 1.2e-59 235.3 437 40.3
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 1.6e-59 235.0 689 41.7
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 2.1e-59 234.6 438 40.0
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 1.1e-58 232.3 388 45.4
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 1.1e-58 232.3 660 43.2
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.8e-58 231.5 665 43.2
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.8e-58 231.5 388 44.1
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 1.8e-58 231.5 439 41.2
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 3.1e-58 230.7 667 46.0
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 4.0e-58 230.3 629 43.1
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 4.0e-58 230.3 713 45.4
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.6e-57 227.6 661 48.9
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 4.4e-57 226.9 404 43.3
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 7.5e-57 226.1 672 42.0
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 9.9e-57 225.7 446 40.1
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 1.3e-56 225.3 446 40.6
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.7e-56 224.9 660 47.6
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 2.2e-56 224.6 663 46.5
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 6.4e-56 223.0 395 42.3
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 3.2e-55 220.7 398 43.5
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 4.1e-55 220.3 661 44.2
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 7.1e-55 219.5 384 42.7
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 9.2e-55 219.2 420 41.7
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 1.2e-54 218.8 398 40.7
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 5.1e-53 213.4 415 41.4
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 6.6e-53 213.0 412 41.7
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 1.1e-52 212.2 423 40.2
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 8.1e-51 206.1 637 41.3
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 3.4e-49 200.7 376 39.1
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 3.8e-48 197.2 380 38.9
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 1.9e-47 194.9 269 46.5
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 1.9e-47 194.9 677 38.0
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 5.4e-47 193.4 262 46.9
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 4.6e-46 190.3 457 36.8
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 1.0e-45 189.1 445 37.3
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 1.7e-45 188.3 380 39.2
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 1.1e-44 185.7 465 35.7
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 1.1e-44 185.7 668 37.0
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 4.3e-44 183.7 492 33.7
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 4.3e-44 183.7 281 44.1
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 7.3e-44 183.0 388 38.4
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 4.7e-43 180.3 392 36.7
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 2.6e-41 174.5 406 36.2
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 9.9e-41 172.6 393 37.4
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 9.9e-41 172.6 416 37.5
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 6.4e-40 169.9 403 37.2
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 6.4e-40 169.9 399 35.6
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 8.4e-40 169.5 403 37.5
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.4e-39 168.7 421 35.4
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 6.0e-38 163.3 427 35.4
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 7.8e-38 162.9 394 34.8
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 1.9e-36 158.3 680 39.0
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 6.9e-34 149.8 287 37.6
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 6.9e-34 149.8 388 35.6
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 6.9e-34 149.8 378 35.2
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 9.0e-34 149.4 284 36.6
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 2.0e-33 148.3 388 35.3
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 4.5e-33 147.1 486 34.0
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 7.9e-30 136.3 468 31.2
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 4.5e-25 120.6 477 31.2
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.9e-23 115.2 219 34.7
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 1.5e-20 105.5 461 29.1
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 6.9e-18 96.7 133 40.6
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 3.4e-17 94.4 254 30.7
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-11 75.5 99 34.3
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 2.4e-10 71.6 76 64.5
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 1.7e-08 65.5 430 25.1
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 6.1e-06 57.0 77 37.7


User provided reference genes

Program Settings