Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 7.9e-103 377.1 188 100.0
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 4.7e-71 271.6 188 76.1
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 4.7e-71 271.6 188 76.1
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 1.7e-68 263.1 188 73.9
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 1.2e-66 256.9 188 73.4
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.0e-66 256.1 188 72.3
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.0e-66 256.1 188 72.3
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.0e-65 253.8 188 71.8
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.1e-64 250.4 188 71.3
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.9e-64 249.6 188 71.3
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 3.2e-64 248.8 189 69.8
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 7.2e-64 247.7 188 69.1
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 9.5e-64 247.3 188 70.2
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 9.5e-64 247.3 191 71.2
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 1.6e-63 246.5 188 69.7
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 6.1e-63 244.6 188 69.7
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 1.0e-62 243.8 188 68.6
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 2.3e-62 242.7 187 69.0
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 2.3e-62 242.7 187 69.0
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 4.0e-62 241.9 199 68.3
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 4.0e-62 241.9 188 69.1
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 5.2e-62 241.5 191 68.1
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 1.2e-61 240.4 189 69.3
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 1.5e-61 240.0 188 73.4
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.0e-61 239.6 188 68.6
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.6e-61 239.2 189 70.9
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 7.5e-61 237.7 189 68.8
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 9.8e-61 237.3 188 68.6
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 2.2e-60 236.1 154 77.9
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 2.8e-60 235.7 132 90.2
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 3.7e-60 235.3 152 78.9
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 6.3e-60 234.6 151 78.8
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 8.3e-60 234.2 188 68.6
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 1.1e-59 233.8 189 68.3
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 2.4e-59 232.6 189 66.7
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 4.1e-59 231.9 188 69.1
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 4.1e-59 231.9 168 71.4
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 7.0e-59 231.1 188 67.0
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 7.0e-59 231.1 188 66.0
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 7.0e-59 231.1 188 66.0
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.2e-58 230.3 188 68.1
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 1.6e-58 229.9 188 67.0
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 2.0e-58 229.6 193 65.3
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 2.7e-58 229.2 188 66.0
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 2.7e-58 229.2 188 66.5
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 2.7e-58 229.2 188 64.9
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 2.7e-58 229.2 188 66.0
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 3.5e-58 228.8 157 75.2
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 3.5e-58 228.8 168 71.4
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 4.5e-58 228.4 189 67.2
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 7.8e-58 227.6 188 68.1
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 7.8e-58 227.6 196 66.8
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.3e-57 226.9 177 67.8
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 1.3e-57 226.9 188 67.0
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 1.3e-57 226.9 191 64.9
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 1.3e-57 226.9 189 66.7
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 1.7e-57 226.5 188 65.4
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 2.3e-57 226.1 196 65.3
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 3.8e-57 225.3 143 79.0
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 4.3e-56 221.9 194 63.9
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 5.6e-56 221.5 175 66.9
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 5.6e-56 221.5 175 67.4
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 5.6e-56 221.5 175 67.4
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 5.6e-56 221.5 192 66.7
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 7.3e-56 221.1 175 66.9
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 9.5e-56 220.7 190 66.3
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 9.5e-56 220.7 189 63.5
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 1.2e-55 220.3 177 66.1
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 2.8e-55 219.2 131 82.4
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 2.8e-55 219.2 175 66.3
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 2.8e-55 219.2 163 67.5
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 3.6e-55 218.8 152 71.7
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 4.7e-55 218.4 176 67.0
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 4.7e-55 218.4 176 67.0
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 6.1e-55 218.0 191 63.9
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 6.1e-55 218.0 228 56.1
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 8.0e-55 217.6 176 67.0
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 8.0e-55 217.6 175 65.7
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 8.0e-55 217.6 134 79.1
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 8.0e-55 217.6 175 65.7
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 8.0e-55 217.6 188 63.8
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 1.0e-54 217.2 134 78.4
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 1.0e-54 217.2 134 78.4
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 1.0e-54 217.2 193 63.7
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 1.0e-54 217.2 134 78.4
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 1.0e-54 217.2 189 65.1
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 1.4e-54 216.9 194 63.9
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.3e-54 216.1 177 65.0
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 3.0e-54 215.7 191 63.4
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 3.0e-54 215.7 143 74.1
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 4.0e-54 215.3 175 65.7
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 5.2e-54 214.9 121 84.3
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.2e-54 214.9 182 65.9
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 6.8e-54 214.5 188 61.7
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.2e-53 213.8 176 65.3
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.2e-53 213.8 188 64.9
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.3e-52 210.3 149 71.1
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 2.9e-52 209.1 189 60.3
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 3.7e-52 208.8 191 62.3
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 8.3e-52 207.6 193 59.6
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 4.1e-51 205.3 188 62.2
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 9.2e-51 204.1 114 85.1
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 9.2e-51 204.1 188 62.8
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 1.6e-50 203.4 189 60.3
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 1.6e-50 203.4 157 70.7
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 4.6e-50 201.8 188 62.2
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 7.8e-50 201.1 154 68.2
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 1.7e-49 199.9 188 60.6
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 3.9e-49 198.7 298 43.6
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.9e-48 196.4 130 76.2
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 2.5e-48 196.1 130 76.2
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 9.5e-48 194.1 298 42.6
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 2.8e-47 192.6 150 67.3
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 8.0e-47 191.0 221 53.8
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.4e-46 190.3 188 58.0
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.8e-46 189.9 189 60.3
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.1e-46 189.1 188 56.4
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 5.2e-46 188.3 155 61.9
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 9.8e-45 184.1 167 59.9
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.7e-44 183.3 168 59.5
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 1.1e-43 180.6 191 58.1
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 1.4e-43 180.3 149 65.1
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 7.5e-37 157.9 126 63.5
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 6.4e-36 154.8 153 53.6
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 9.2e-35 151.0 87 86.2
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 6.0e-34 148.3 183 47.0
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.8e-34 147.9 87 83.9
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 1.7e-33 146.7 82 89.0
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 3.0e-33 146.0 82 89.0
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.3e-32 141.4 87 77.0
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 2.4e-30 136.3 108 56.5
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 1.5e-29 133.7 176 48.3
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 6.4e-28 128.3 97 60.8
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 1.6e-26 123.6 82 76.8
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 2.7e-26 122.9 87 74.7
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.6e-23 113.6 134 46.3
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 3.3e-16 89.4 54 77.8
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 8.1e-15 84.7 91 57.1
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.1e-14 84.3 105 50.5
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 3.1e-14 82.8 54 74.1
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 6.9e-14 81.6 89 53.9
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.3e-12 77.4 99 47.5
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 1.3e-09 67.4 63 47.6
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 4.0e-06 55.8 104 40.4
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 9.0e-06 54.7 67 53.7


User provided reference genes

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