Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 0.0e+00 1106.7 568 100.0
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 1.0e-262 909.8 564 82.6
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 4.6e-255 884.4 565 80.0
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 6.0e-255 884.0 570 79.8
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 5.1e-254 880.9 562 80.1
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 8.7e-254 880.2 571 78.5
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.5e-253 879.4 557 80.8
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 2.8e-252 875.2 565 78.4
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 9.0e-251 870.2 565 77.5
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.0e-250 869.0 570 77.2
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.6e-250 868.6 570 77.0
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 2.9e-249 865.1 564 78.4
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 3.2e-248 861.7 562 77.6
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 1.2e-247 859.8 562 77.6
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 1.2e-247 859.8 565 78.2
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 2.1e-247 859.0 569 77.2
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 6.0e-247 857.4 563 77.4
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.5e-245 852.8 562 77.9
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.5e-245 852.8 566 76.1
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 1.6e-244 849.4 563 76.6
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 2.1e-244 849.0 564 76.2
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 3.7e-244 848.2 571 76.2
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 1.1e-243 846.7 565 75.0
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 1.1e-243 846.7 562 76.3
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 5.3e-243 844.3 634 70.0
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 1.5e-242 842.8 568 75.9
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 7.6e-242 840.5 561 76.1
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 8.4e-241 837.0 565 74.7
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 3.2e-240 835.1 586 74.4
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 5.5e-240 834.3 550 78.0
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 1.6e-239 832.8 565 73.8
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 3.0e-238 828.6 561 75.0
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 3.0e-238 828.6 571 75.0
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 5.1e-238 827.8 569 74.2
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 1.1e-237 826.6 566 74.4
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 1.5e-237 826.2 570 74.6
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.9e-237 825.9 570 74.6
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 3.7e-236 821.6 565 74.0
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 2.4e-235 818.9 570 74.7
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 5.3e-235 817.8 562 75.6
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 6.9e-235 817.4 567 73.0
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 6.9e-235 817.4 567 72.5
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.6e-234 815.5 608 71.5
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.4e-234 815.1 580 72.9
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 1.7e-233 812.8 565 72.4
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 2.9e-233 812.0 550 75.3
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 6.5e-233 810.8 626 69.0
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 6.5e-233 810.8 565 74.2
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 1.9e-232 809.3 569 72.2
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 4.2e-232 808.1 564 71.6
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 1.0e-230 803.5 569 71.2
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 3.3e-229 798.5 550 74.0
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 4.3e-229 798.1 565 72.2
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 6.3e-228 794.3 565 71.7
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 5.3e-227 791.2 574 72.1
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.2e-226 790.0 568 72.7
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 1.5e-226 789.6 551 72.1
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 5.9e-226 787.7 538 77.1
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 7.7e-226 787.3 570 72.3
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 1.0e-225 786.9 574 72.3
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 2.2e-225 785.8 570 71.8
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 3.8e-225 785.0 583 71.7
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 6.5e-225 784.3 574 72.0
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 8.5e-225 783.9 570 71.1
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.1e-224 783.5 570 72.5
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.4e-224 783.1 573 69.3
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.9e-224 782.7 563 72.3
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 1.2e-223 780.0 568 71.8
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 3.6e-223 778.5 566 71.7
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 4.7e-223 778.1 563 70.0
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.4e-222 776.5 566 71.6
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 1.4e-222 776.5 566 71.4
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 2.3e-222 775.8 566 71.4
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 8.8e-222 773.9 550 71.8
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 1.4e-216 756.5 583 67.8
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.1e-215 752.7 565 69.2
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 3.9e-214 748.4 564 68.6
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 5.2e-214 748.0 588 67.9
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 6.7e-214 747.7 607 66.6
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 1.5e-213 746.5 549 71.6
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.5e-213 746.5 562 68.0
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 2.2e-212 742.7 552 70.8
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 2.4e-211 739.2 574 67.4
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 5.9e-210 734.6 562 68.1
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 3.2e-208 728.8 569 65.6
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 7.2e-200 701.0 578 65.9
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.7e-193 679.9 512 68.9
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 1.1e-187 660.6 428 78.7
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 1.7e-177 626.7 686 53.1
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 7.0e-171 604.7 426 72.8
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 1.3e-164 583.9 571 54.3
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 2.1e-159 566.6 570 53.7
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 8.9e-158 561.2 566 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 1.9e-144 516.9 570 49.3
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 6.7e-137 491.9 554 50.4
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.8e-116 422.9 275 77.1
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 2.5e-115 420.2 320 70.3
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.1e-98 364.0 277 69.0
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 1.2e-93 348.2 290 62.1
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 3.2e-91 340.1 218 80.3
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 2.5e-75 287.3 186 75.8
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.5e-56 224.9 294 50.0
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 2.4e-54 217.6 166 67.5
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 2.1e-45 188.0 242 43.4
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.1e-38 165.6 125 67.2
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 4.6e-37 160.2 142 55.6
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.0e-36 157.5 125 64.8
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 3.9e-36 157.1 112 71.4
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.9e-31 141.0 103 70.9
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.9e-30 138.3 134 53.0
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 1.6e-29 135.2 112 63.4
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.9e-23 114.4 109 53.2
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 7.1e-22 109.8 121 49.6
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 8.1e-18 96.3 181 37.6
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 1.1e-17 95.9 56 92.9
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 5.3e-17 93.6 82 62.2
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 8.4e-15 86.3 192 34.9
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.9e-12 77.4 143 39.9
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 9.6e-11 72.8 45 73.3
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.6e-10 72.0 98 39.8
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 1.3e-07 62.4 37 81.1
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 6.5e-07 60.1 98 37.8
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 5.5e-06 57.0 51 62.7


User provided reference genes

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