Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.9e-166 590.1 585 100.0
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.1e-116 422.5 583 80.8
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 5.3e-113 412.5 583 79.9
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 2.6e-112 410.2 583 78.6
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.0e-111 408.3 585 77.9
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.1e-110 404.8 585 76.6
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.9e-110 404.1 583 76.2
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 2.1e-109 400.6 581 73.7
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 6.3e-106 389.0 585 78.8
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.1e-105 388.3 583 76.3
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.6e-104 383.6 585 76.6
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 2.6e-104 383.6 585 76.2
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 2.6e-104 383.6 583 70.3
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.7e-103 380.9 593 68.8
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.4e-102 377.9 585 78.1
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 2.7e-101 373.6 583 76.8
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.8e-100 370.9 587 70.9
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 8.8e-100 368.6 581 73.5
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 2.2e-98 364.0 583 73.1
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 1.8e-97 360.9 583 72.6
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 5.3e-97 359.4 583 70.7
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.3e-97 359.4 581 73.7
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 2.0e-96 357.5 583 72.9
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.4e-94 351.3 583 69.5
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 1.9e-94 350.9 581 73.3
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 3.2e-94 350.1 583 77.0
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.1e-93 347.4 585 69.6
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 4.7e-93 346.3 600 69.8
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 3.9e-92 343.2 365 74.0
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 5.1e-92 342.8 581 72.6
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.1e-91 341.7 602 74.8
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 2.0e-91 340.9 585 71.6
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 2.2e-90 337.4 587 68.5
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 2.8e-90 337.0 591 67.9
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 1.1e-89 335.1 585 72.6
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.8e-89 334.3 497 80.5
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 4.1e-89 333.2 497 77.9
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.2e-88 331.6 588 60.7
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 2.6e-88 330.5 583 75.3
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.3e-87 328.2 583 70.7
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 1.3e-87 328.2 564 76.2
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 3.8e-87 326.6 585 69.4
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 6.5e-87 325.9 585 69.1
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 6.5e-87 325.9 591 68.9
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 8.5e-87 325.5 583 68.8
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.9e-86 324.3 585 68.2
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 9.4e-86 322.0 585 67.4
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 4.7e-85 319.7 589 68.3
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.0e-84 318.5 584 73.3
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 1.1e-83 315.1 497 66.2
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 4.4e-83 313.2 587 66.6
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 4.4e-83 313.2 585 70.8
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 5.7e-83 312.8 584 74.0
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 7.4e-83 312.4 585 68.9
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.3e-82 311.6 584 74.0
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.7e-82 311.2 552 68.1
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 6.3e-82 309.3 574 59.9
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.8e-81 307.8 583 52.7
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 3.1e-81 307.0 583 73.8
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 5.3e-81 306.2 581 70.9
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 7.0e-81 305.8 582 71.1
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 9.1e-81 305.4 589 66.6
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.9e-80 302.8 588 66.7
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.0e-79 302.0 585 67.2
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.7e-79 301.2 313 67.1
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 6.5e-79 299.3 598 65.4
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 3.2e-78 297.0 589 65.9
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 1.2e-77 295.0 587 69.8
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 4.7e-77 293.1 583 67.8
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 4.7e-77 293.1 630 67.9
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.0e-76 292.0 585 68.9
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 3.0e-76 290.4 561 72.9
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 4.0e-76 290.0 683 64.3
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 5.2e-76 289.7 583 71.2
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 6.8e-76 289.3 495 72.1
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 8.8e-76 288.9 563 67.0
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 7.5e-75 285.8 278 72.7
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 3.7e-74 283.5 598 62.0
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 1.1e-73 282.0 562 67.1
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 1.6e-72 278.1 584 64.7
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 4.5e-72 276.6 366 68.0
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.0e-71 275.4 643 59.7
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 2.2e-71 274.2 366 68.3
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 2.9e-71 273.9 586 68.1
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.1e-70 271.9 583 72.2
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 4.2e-70 270.0 562 69.8
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 4.7e-69 266.5 586 68.3
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 2.3e-68 264.2 558 41.2
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 4.0e-68 263.5 583 70.5
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 4.0e-68 263.5 496 70.0
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.3e-66 258.5 592 65.2
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 1.7e-66 258.1 443 76.3
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.7e-66 258.1 222 70.7
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 9.1e-65 252.3 561 57.9
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 6.1e-61 239.6 571 62.9
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.4e-60 238.4 588 66.5
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 2.4e-57 227.6 342 60.2
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 3.5e-56 223.8 562 60.9
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 9.5e-54 215.7 590 55.4
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 7.5e-51 206.1 202 69.8
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 2.2e-50 204.5 593 56.5
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 6.2e-45 186.4 145 95.9
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 6.2e-45 186.4 145 95.9
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 6.2e-45 186.4 145 95.9
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 8.9e-44 182.6 147 61.2
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 1.3e-42 178.7 543 61.0
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 4.7e-37 160.2 585 56.2
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 1.1e-33 149.1 142 56.3
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 5.4e-33 146.7 121 61.2
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 1.0e-31 142.5 113 63.7
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 8.4e-26 122.9 202 35.6
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.3e-23 115.5 75 78.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.3e-23 115.5 75 78.7
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.7e-23 115.2 98 67.3
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 3.9e-23 114.0 75 77.3
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 6.6e-23 113.2 75 72.0
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 8.7e-23 112.8 75 77.3
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.5e-19 102.1 93 57.0
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.7e-18 98.6 60 78.3
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 8.7e-15 86.3 53 77.4
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 3.6e-13 80.9 47 80.9
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 9.0e-12 76.3 75 48.0
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 9.0e-12 76.3 225 44.0
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 3.8e-10 70.9 44 77.3
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.1e-09 69.3 40 80.0
Thecc.07G078700 Theobroma cacao HOM05D006220 ORTHO05D007590 2.7e-08 64.7 61 55.7
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 7.9e-08 63.2 294 27.9
Duzib268G0075 Durio zibethinus HOM05D000101 ORTHO05D000089 1.9e-06 58.5 158 27.8
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 3.3e-06 57.8 39 71.8
HanXRQChr01g0008901 Helianthus annuus HOM05D006220 ORTHO05D007590 9.6e-06 56.2 33 84.8


User provided reference genes

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