Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 8.9e-265 916.4 462 100.0
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 4.2e-182 641.7 447 71.4
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.8e-180 636.3 455 70.5
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 2.0e-179 632.9 453 70.4
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 2.2e-178 629.4 453 70.2
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.8e-178 629.0 455 69.2
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.7e-178 628.6 467 67.2
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.8e-177 626.3 444 69.4
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.8e-177 626.3 444 69.4
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 7.0e-177 624.4 447 68.7
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 2.0e-176 622.9 439 71.5
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.3e-175 620.2 431 71.7
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 6.1e-173 611.3 441 68.5
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 7.0e-169 597.8 457 65.9
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 2.0e-168 596.3 394 73.9
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 5.9e-168 594.7 454 65.2
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 1.0e-167 594.0 454 65.2
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 1.5e-166 590.1 454 63.7
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 7.3e-166 587.8 426 66.7
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 6.1e-165 584.7 441 66.9
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 8.0e-165 584.3 455 63.7
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 1.0e-164 583.9 441 64.9
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 2.3e-164 582.8 454 63.7
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 8.9e-164 580.9 454 63.2
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 2.0e-163 579.7 440 66.1
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 3.4e-163 578.9 439 65.6
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.7e-162 576.6 440 65.7
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 2.2e-162 576.2 449 64.6
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 2.9e-162 575.9 453 61.8
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 2.4e-161 572.8 456 63.6
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 2.7e-160 569.3 452 63.3
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 4.6e-160 568.5 427 65.6
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 1.7e-159 566.6 441 64.9
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 2.3e-159 566.2 427 64.2
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 1.9e-158 563.1 437 63.2
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 2.5e-158 562.8 427 63.5
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 3.3e-158 562.4 427 63.7
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 2.1e-157 559.7 440 63.4
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 2.8e-157 559.3 442 62.0
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 1.4e-156 557.0 440 62.5
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 1.4e-156 557.0 449 61.0
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 1.2e-155 553.9 437 61.1
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 1.2e-155 553.9 410 65.1
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 2.6e-155 552.7 442 60.9
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 7.5e-155 551.2 441 61.2
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 1.3e-154 550.4 441 61.0
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.7e-154 550.1 437 60.0
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 4.9e-154 548.5 439 63.6
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 8.3e-154 547.7 452 60.6
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 8.3e-154 547.7 454 59.0
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 5.4e-153 545.0 442 60.9
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 9.2e-153 544.3 459 61.0
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 7.8e-152 541.2 455 60.2
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.7e-151 540.0 417 62.4
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 6.6e-151 538.1 445 60.9
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 4.3e-150 535.4 427 61.4
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 5.6e-150 535.0 456 59.9
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 3.6e-149 532.3 455 60.7
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 4.7e-149 531.9 450 58.9
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 4.7e-149 531.9 427 61.8
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 8.1e-149 531.2 398 65.8
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 2.0e-147 526.6 468 59.0
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.7e-146 523.5 465 58.7
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 2.2e-146 523.1 431 61.0
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 1.0e-143 514.2 442 58.4
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 2.3e-143 513.1 431 61.0
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 5.6e-142 508.4 431 60.3
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 6.8e-140 501.5 434 59.0
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 1.7e-138 496.9 430 59.5
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.1e-137 494.2 421 56.8
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 1.4e-137 493.8 428 59.8
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 5.4e-137 491.9 437 58.4
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 1.3e-135 487.3 438 58.2
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 5.1e-135 485.3 436 57.8
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.1e-135 485.3 447 58.8
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 6.6e-135 485.0 438 58.2
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 9.6e-134 481.1 436 55.3
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 1.1e-132 477.6 461 54.0
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 1.2e-131 474.2 323 71.5
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 2.4e-129 466.5 470 53.8
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.6e-128 463.8 354 65.5
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 6.0e-128 461.8 442 54.1
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 6.6e-127 458.4 727 39.2
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 6.6e-127 458.4 396 58.1
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 1.5e-126 457.2 440 53.6
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 1.1e-124 451.1 444 52.9
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.5e-115 420.6 385 59.2
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 9.9e-115 417.9 434 49.1
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 1.1e-113 414.5 305 65.2
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.6e-109 400.6 327 59.3
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 2.8e-109 399.8 307 62.5
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 2.0e-107 393.7 304 63.5
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 4.6e-104 382.5 368 48.9
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 7.9e-104 381.7 365 50.7
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 1.3e-103 380.9 301 62.1
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 9.6e-102 374.8 442 46.6
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 9.6e-102 374.8 300 63.0
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 3.6e-96 356.3 400 47.5
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.1e-92 343.2 402 48.5
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 2.9e-90 336.7 305 56.4
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.9e-89 334.0 242 64.5
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 6.7e-87 325.5 302 54.3
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 2.0e-78 297.4 348 46.8
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.5e-70 271.2 214 63.6
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 6.3e-69 265.8 217 60.8
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 7.0e-68 262.3 229 58.1
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.7e-67 260.4 395 40.5
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.4e-60 238.0 215 54.9
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 2.7e-59 233.8 173 60.7
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 8.0e-56 222.2 214 57.9
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 3.4e-46 190.3 141 67.4
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 7.5e-46 189.1 134 64.9
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 3.7e-45 186.8 185 53.0
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 4.1e-44 183.3 209 45.5
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 8.9e-39 165.6 135 62.2
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 2.0e-35 154.5 132 60.6
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 8.1e-32 142.5 94 69.1
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 1.5e-30 138.3 128 57.0
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 1.4e-23 115.2 400 26.8
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 1.8e-23 114.8 140 40.7
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 1.8e-23 114.8 388 26.3
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 4.4e-22 110.2 412 26.5
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 5.8e-22 109.8 150 46.0
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.6e-19 101.7 100 55.0
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 6.9e-15 86.3 405 24.4
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 1.4e-12 78.6 58 65.5
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 5.3e-07 60.1 40 70.0


User provided reference genes

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