Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 0.0e+00 1178.3 584 100.0
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 1.6e-271 939.1 573 79.6
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 4.9e-268 927.5 564 78.4
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 3.2e-267 924.9 573 78.4
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 9.2e-267 923.3 578 78.0
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 1.6e-266 922.5 573 78.5
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 4.6e-266 921.0 555 79.5
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 6.0e-266 920.6 576 77.6
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 3.9e-265 917.9 577 75.7
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 3.9e-265 917.9 578 77.7
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 5.1e-265 917.5 577 76.8
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.9e-264 915.6 555 79.6
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 4.3e-264 914.4 576 76.9
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 2.6e-261 905.2 573 75.9
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 4.4e-261 904.4 569 76.8
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 5.8e-261 904.0 579 75.8
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 1.3e-260 902.9 560 77.9
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 4.9e-260 901.0 572 76.0
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 8.3e-260 900.2 579 75.8
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 8.3e-260 900.2 576 75.7
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.4e-259 898.7 574 76.1
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 5.4e-259 897.5 557 77.2
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 1.2e-258 896.3 565 77.0
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 2.7e-258 895.2 577 74.4
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.3e-257 892.9 579 75.3
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 6.6e-257 890.6 555 76.6
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 1.9e-256 889.0 579 75.0
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 5.6e-256 887.5 574 75.8
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.2e-255 886.3 602 72.3
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 2.8e-255 885.2 556 75.5
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 3.6e-255 884.8 651 69.1
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 6.2e-255 884.0 556 75.9
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 8.1e-255 883.6 575 74.4
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 1.1e-254 883.2 656 67.5
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 1.4e-254 882.9 565 75.2
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 3.1e-254 881.7 538 77.9
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 7.6e-253 877.1 544 77.6
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 2.2e-252 875.5 549 77.0
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 3.8e-252 874.8 549 75.2
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 4.9e-252 874.4 561 74.9
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.9e-252 874.4 575 74.1
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 8.4e-252 873.6 571 74.3
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.1e-251 873.2 597 72.2
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 7.1e-251 870.5 556 75.4
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 6.0e-250 867.5 575 72.9
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 1.0e-249 866.7 562 74.0
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 3.9e-249 864.8 579 73.4
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 5.1e-249 864.4 570 73.7
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 1.1e-248 863.2 550 74.2
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 4.3e-248 861.3 544 74.6
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 4.7e-247 857.8 555 74.8
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 6.2e-247 857.4 590 73.1
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 6.9e-246 854.0 563 74.2
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 7.6e-245 850.5 574 72.0
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 2.3e-241 839.0 577 71.6
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 3.3e-240 835.1 549 72.7
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 1.3e-239 833.2 549 72.7
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 2.1e-239 832.4 549 73.6
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 4.8e-239 831.2 549 72.7
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 8.1e-239 830.5 558 72.9
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 5.3e-238 827.8 549 71.9
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 9.0e-238 827.0 576 71.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 5.8e-237 824.3 578 70.4
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 1.7e-236 822.8 549 71.6
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 1.7e-236 822.8 549 71.8
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 2.2e-236 822.4 549 71.6
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 2.2e-236 822.4 575 69.6
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 2.9e-236 822.0 549 71.8
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 1.1e-235 820.1 538 73.0
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 1.4e-235 819.7 551 71.3
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 2.3e-233 812.4 549 70.9
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 2.8e-231 805.4 551 70.2
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 1.7e-228 796.2 544 70.8
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 2.9e-228 795.4 526 73.8
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 6.4e-228 794.3 489 79.1
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 1.9e-227 792.7 556 70.3
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.6e-226 789.6 500 75.0
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.3e-225 785.8 575 68.2
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 2.3e-225 785.8 506 76.1
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 6.9e-222 774.2 551 66.8
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 2.1e-218 762.7 487 76.0
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 6.5e-212 741.1 512 71.5
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 2.5e-211 739.2 486 73.5
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 1.6e-210 736.5 584 65.1
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 7.4e-208 727.6 538 68.6
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 7.2e-203 711.1 576 64.1
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 2.1e-202 709.5 472 71.0
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 5.2e-193 678.3 441 75.3
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 2.1e-186 656.4 544 56.8
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 4.0e-185 652.1 543 56.0
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.3e-180 637.1 549 60.8
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 6.1e-178 628.2 520 59.2
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 4.6e-157 558.9 550 56.0
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 6.6e-156 555.1 318 81.4
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 1.9e-155 553.5 373 72.9
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 9.5e-155 551.2 308 84.4
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.2e-154 550.8 335 78.5
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.4e-150 537.3 578 53.1
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 1.2e-146 524.2 342 71.9
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 1.2e-141 507.7 373 67.3
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 2.1e-141 506.9 447 58.8
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.8e-137 493.8 571 44.7
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 2.9e-135 486.5 428 60.5
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 2.5e-131 473.4 308 75.3
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 1.8e-108 397.5 367 55.3
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 6.3e-98 362.5 204 83.8
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 8.2e-98 362.1 631 34.5
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 1.3e-90 338.2 245 67.8
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.6e-88 330.5 233 70.0
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 9.1e-57 225.7 140 75.0
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.0e-55 222.2 166 62.7
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 2.3e-47 194.5 158 61.4
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 6.8e-44 183.0 128 68.0
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 2.0e-43 181.4 128 61.7
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 5.6e-38 163.3 99 73.7
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 5.8e-35 153.3 160 53.8
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 3.9e-31 140.6 85 76.5
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 5.8e-27 126.7 100 54.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.0e-23 115.9 69 76.8
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.8e-20 105.1 108 51.9
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 1.8e-20 105.1 72 70.8
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 5.2e-20 103.6 62 69.4
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 2.1e-16 91.7 69 68.1
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 6.2e-13 80.1 85 45.9
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 4.0e-12 77.4 52 73.1
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 7.6e-11 73.2 42 76.2
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 4.2e-09 67.4 83 50.6
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 1.2e-08 65.9 45 68.9
Lj5g0008066 Lotus japonicus HOM05D002380 ORTHO05D008286 5.6e-06 57.0 40 65.0


User provided reference genes

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