Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g02510 Coffea canephora HOM05D005631 ORTHO05D006765 5.4e-49 197.6 119 100.0
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 3.7e-21 105.1 110 69.1
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 1.5e-19 99.8 107 55.1
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 7.7e-19 97.4 107 60.7
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 2.9e-18 95.5 107 53.3
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 5.0e-18 94.7 107 57.9
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 1.1e-17 93.6 105 54.3
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 1.1e-17 93.6 107 53.3
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 1.1e-17 93.6 107 53.3
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 1.1e-17 93.6 107 53.3
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 3.2e-17 92.0 107 51.4
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 4.2e-17 91.7 105 53.3
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 4.2e-17 91.7 107 52.3
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 7.2e-17 90.9 104 55.8
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 1.2e-16 90.1 107 54.2
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 1.6e-16 89.7 107 49.5
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 2.1e-16 89.4 110 50.9
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 2.1e-16 89.4 107 51.4
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 4.6e-16 88.2 109 60.6
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 4.6e-16 88.2 107 49.5
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 4.6e-16 88.2 107 49.5
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 6.1e-16 87.8 107 49.5
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 7.9e-16 87.4 108 52.8
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 1.0e-15 87.0 109 52.3
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 1.8e-15 86.3 108 50.9
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 2.3e-15 85.9 108 58.3
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 3.0e-15 85.5 107 48.6
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 3.0e-15 85.5 108 50.9
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 5.1e-15 84.7 109 54.1
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 5.1e-15 84.7 113 57.5
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 6.7e-15 84.3 107 48.6
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 8.8e-15 84.0 107 48.6
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 1.1e-14 83.6 109 54.1
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 2.5e-14 82.4 109 49.5
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 3.3e-14 82.0 107 50.5
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 4.3e-14 81.6 108 49.1
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 4.3e-14 81.6 106 53.8
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 5.7e-14 81.3 109 52.3
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 5.7e-14 81.3 107 48.6
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 5.7e-14 81.3 107 48.6
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 7.4e-14 80.9 109 52.3
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 7.4e-14 80.9 110 49.1
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 9.7e-14 80.5 103 48.5
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 9.7e-14 80.5 107 52.3
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 9.7e-14 80.5 107 48.6
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 1.7e-13 79.7 104 52.9
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 1.7e-13 79.7 107 45.8
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 2.2e-13 79.3 107 48.6
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 2.2e-13 79.3 108 48.1
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 2.8e-13 79.0 105 52.4
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 2.8e-13 79.0 105 52.4
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 2.8e-13 79.0 107 48.6
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 3.7e-13 78.6 109 47.7
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 3.7e-13 78.6 107 50.5
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 3.7e-13 78.6 105 58.1
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 8.2e-13 77.4 108 49.1
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 1.1e-12 77.0 108 51.9
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 1.4e-12 76.6 108 48.1
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 1.8e-12 76.3 108 47.2
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 2.4e-12 75.9 98 62.2
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 3.1e-12 75.5 109 52.3
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 4.1e-12 75.1 100 50.0
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 4.1e-12 75.1 106 48.1
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 5.3e-12 74.7 107 47.7
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 5.3e-12 74.7 105 52.4
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 9.1e-12 73.9 108 49.1
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 1.2e-11 73.6 108 58.3
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 1.5e-11 73.2 108 46.3
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 1.5e-11 73.2 110 50.9
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 1.5e-11 73.2 108 48.1
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.5e-11 73.2 108 48.1
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.5e-11 73.2 108 48.1
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.5e-11 73.2 108 49.1
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 2.0e-11 72.8 108 48.1
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 2.6e-11 72.4 108 50.9
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 7.7e-11 70.9 108 47.2
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 1.3e-10 70.1 107 42.1
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 2.2e-10 69.3 109 46.8
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 2.9e-10 68.9 55 67.3
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 5.0e-10 68.2 109 45.0
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 5.0e-10 68.2 110 45.5
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 6.5e-10 67.8 118 44.9
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 8.5e-10 67.4 109 45.9
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 8.5e-10 67.4 109 45.0
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 1.1e-09 67.0 109 45.0
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 1.1e-09 67.0 109 45.0
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 1.1e-09 67.0 109 45.0
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 1.1e-09 67.0 109 45.0
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 1.1e-09 67.0 109 45.0
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 1.1e-09 67.0 109 45.0
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 1.1e-09 67.0 109 45.0
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 1.4e-09 66.6 108 47.2
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 3.2e-09 65.5 109 43.1
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 4.2e-09 65.1 107 44.9
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 5.5e-09 64.7 110 43.6
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 5.5e-09 64.7 103 54.4
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 5.5e-09 64.7 109 44.0
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 5.5e-09 64.7 109 44.0
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 7.2e-09 64.3 55 60.0
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 9.4e-09 63.9 110 44.5
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 9.4e-09 63.9 109 43.1
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 1.6e-08 63.2 92 47.8
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 1.5e-06 56.6 116 38.8
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 1.5e-06 56.6 87 49.4


User provided reference genes

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