Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g02120 Coffea canephora HOM05D000140 ORTHO05D000087 5.5e-27 123.6 65 100.0
Cc11_g02910 Coffea canephora HOM05D000140 ORTHO05D000087 1.6e-18 95.5 57 89.5
Cc00_g18780 Coffea canephora HOM05D000140 ORTHO05D000087 5.7e-16 87.0 63 76.2
Cc01_g11270 Coffea canephora HOM05D000140 ORTHO05D000087 4.5e-13 77.4 57 77.2
Cc00_g20350 Coffea canephora HOM05D000140 ORTHO05D000087 1.3e-09 65.9 44 79.5
Phvul.011G077600 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 3.3e-08 61.2 52 61.5
VMungo1127G0412 Vigna mungo HOM05D000140 ORTHO05D000087 7.4e-08 60.1 57 59.6
CiPaw.13G111300 Carya illinoinensis HOM05D000140 ORTHO05D000087 9.7e-08 59.7 57 57.9
CiPaw.13G111700 Carya illinoinensis HOM05D000140 ORTHO05D000087 9.7e-08 59.7 57 57.9
Lalb_Chr03g0027261 Lupinus albus HOM05D000140 ORTHO05D000087 9.7e-08 59.7 58 65.5
VMungo1127G1776 Vigna mungo HOM05D000140 ORTHO05D000087 9.7e-08 59.7 51 60.8
CANSAT54G0034 Cannabis sativa HOM05D000140 ORTHO05D000087 1.3e-07 59.3 51 62.7
Haze_23867 Corylus avellana HOM05D000140 ORTHO05D000087 1.6e-07 58.9 57 57.9
Potri.009G012400 Populus trichocarpa HOM05D000140 ORTHO05D000087 2.2e-07 58.5 49 57.1
Cfa011332 Carpinus fangiana HOM05D000140 ORTHO05D000087 2.8e-07 58.2 57 57.9
Medtr4g059680 Medicago truncatula HOM05D000140 ORTHO05D000087 2.8e-07 58.2 58 60.3
Sopen11g028000 Solanum pennellii HOM05D000140 ORTHO05D000087 2.8e-07 58.2 51 58.8
Thecc.09G257400 Theobroma cacao HOM05D000140 ORTHO05D000087 2.8e-07 58.2 53 60.4
A03p26370 Brassica napus HOM05D000140 ORTHO05D000087 3.7e-07 57.8 44 61.4
Glyma.11G156722 Glycine max HOM05D000140 ORTHO05D000087 3.7e-07 57.8 53 56.6
TPR.G15562 Trifolium pratense HOM05D000140 ORTHO05D000087 3.7e-07 57.8 50 64.0
Dinv32760 Davidia involucrata HOM05D000140 ORTHO05D000087 4.8e-07 57.4 55 54.5
Duzib168G1746 Durio zibethinus HOM05D000140 ORTHO05D000087 6.3e-07 57.0 45 62.2
Migut.D02204 Erythranthe guttata HOM05D000140 ORTHO05D000087 6.3e-07 57.0 59 57.6
FAN26G3174 Fragaria x ananassa HOM05D000140 ORTHO05D000087 6.3e-07 57.0 57 50.9
Lj3g0011131 Lotus japonicus HOM05D000140 ORTHO05D000087 6.3e-07 57.0 58 58.6
QL02p062720 Quercus lobata HOM05D000140 ORTHO05D000087 6.3e-07 57.0 49 49.0
Solyc11g069270.2 Solanum lycopersicum HOM05D000140 ORTHO05D000087 6.3e-07 57.0 51 56.9
vmacro03187 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 6.3e-07 57.0 55 56.4
GSVIVG01025170001 Vitis vinifera HOM05D000140 ORTHO05D000087 6.3e-07 57.0 57 61.4
BcaC01g04967 Brassica carinata HOM05D000140 ORTHO05D000087 8.2e-07 56.6 43 62.8
C03p31630 Brassica napus HOM05D000140 ORTHO05D000087 8.2e-07 56.6 43 62.8
BolC3t15506H Brassica oleracea HOM05D000140 ORTHO05D000087 8.2e-07 56.6 43 62.8
BraA03t11851Z Brassica rapa HOM05D000140 ORTHO05D000087 8.2e-07 56.6 43 62.8
Carub.0004s0941 Capsella rubella HOM05D000140 ORTHO05D000087 8.2e-07 56.6 57 54.4
Cfa011335 Carpinus fangiana HOM05D000140 ORTHO05D000087 8.2e-07 56.6 57 52.6
Phvul.011G074900 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 8.2e-07 56.6 57 56.1
Phvul.L001654 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 8.2e-07 56.6 57 56.1
PGSC0003DMG400008109 Solanum tuberosum HOM05D000140 ORTHO05D000087 8.2e-07 56.6 51 58.8
AL4G21550 Arabidopsis lyrata HOM05D000140 ORTHO05D000087 1.1e-06 56.2 47 57.4
FAN28G2723 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.1e-06 56.2 57 50.9
Manes.16G102400 Manihot esculenta HOM05D000140 ORTHO05D000087 1.1e-06 56.2 57 47.4
Prupe.6G099700 Prunus persica HOM05D000140 ORTHO05D000087 1.1e-06 56.2 57 50.9
Rhsim13G0093500 Rhododendron simsii HOM05D000140 ORTHO05D000087 1.1e-06 56.2 47 61.7
Thhalv10016234m.g Eutrema salsugineum HOM05D000140 ORTHO05D000087 1.4e-06 55.8 47 55.3
Manes.11G143900 Manihot esculenta HOM05D000140 ORTHO05D000087 1.4e-06 55.8 50 62.0
Nitab4.5_0009463g0020 Nicotiana tabacum HOM05D000140 ORTHO05D000087 1.4e-06 55.8 35 74.3
Peaxi162Scf00270g01010 Petunia axillaris HOM05D000140 ORTHO05D000087 1.4e-06 55.8 56 55.4
Sp4g11290 Schrenkiella parvula HOM05D000140 ORTHO05D000087 1.4e-06 55.8 57 49.1
Aa31LG5G7760 Aethionema arabicum HOM05D000140 ORTHO05D000087 1.8e-06 55.5 57 54.4
ClCG03G002220 Citrullus lanatus HOM05D000140 ORTHO05D000087 1.8e-06 55.5 59 50.8
Eucgr.J00936 Eucalyptus grandis HOM05D000140 ORTHO05D000087 1.8e-06 55.5 38 65.8
Gohir.A05G074300 Gossypium hirsutum HOM05D000140 ORTHO05D000087 1.8e-06 55.5 57 52.6
Gohir.D05G077000 Gossypium hirsutum HOM05D000140 ORTHO05D000087 1.8e-06 55.5 57 52.6
Gorai.009G078400 Gossypium raimondii HOM05D000140 ORTHO05D000087 1.8e-06 55.5 57 52.6
Nitab4.5_0000650g0090 Nicotiana tabacum HOM05D000140 ORTHO05D000087 1.8e-06 55.5 33 78.8
Phvul.011G074300 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 1.8e-06 55.5 52 55.8
Psat7g224360 Pisum sativum HOM05D000140 ORTHO05D000087 1.8e-06 55.5 58 56.9
RcHm_v2.0_Chr2g0093311 Rosa chinensis HOM05D000140 ORTHO05D000087 1.8e-06 55.5 47 51.1
VMungo1127G0469 Vigna mungo HOM05D000140 ORTHO05D000087 1.8e-06 55.5 52 55.8
AT2G28470 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 2.4e-06 55.1 32 81.2
BcaB01g03104 Brassica carinata HOM05D000140 ORTHO05D000087 2.4e-06 55.1 43 60.5
Ciclev10027805m.g Citrus clementina HOM05D000140 ORTHO05D000087 2.4e-06 55.1 42 64.3
Lsat_1_v5_gn_6_46900 Lactuca sativa HOM05D000140 ORTHO05D000087 2.4e-06 55.1 54 51.9
Lalb_Chr07g0180821 Lupinus albus HOM05D000140 ORTHO05D000087 2.4e-06 55.1 48 56.2
THA.LOC104800611 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 2.4e-06 55.1 58 51.7
TPR.G11594 Trifolium pratense HOM05D000140 ORTHO05D000087 2.4e-06 55.1 41 65.9
HPP92_012668 Vanilla planifolia HOM05D000140 ORTHO05D000087 2.4e-06 55.1 44 63.6
A07p19030 Brassica napus HOM05D000140 ORTHO05D000087 3.1e-06 54.7 57 54.4
BraA07t29608Z Brassica rapa HOM05D000140 ORTHO05D000087 3.1e-06 54.7 57 54.4
Ca_05250_v3 Cicer arietinum L. HOM05D000140 ORTHO05D000087 3.1e-06 54.7 50 62.0
Haze_23868 Corylus avellana HOM05D000140 ORTHO05D000087 3.1e-06 54.7 57 54.4
DCAR_015545 Daucus carota HOM05D000140 ORTHO05D000087 3.1e-06 54.7 55 49.1
FvH4_1g07410 Fragaria vesca HOM05D000140 ORTHO05D000087 3.1e-06 54.7 47 48.9
FAN19G1661 Fragaria x ananassa HOM05D000140 ORTHO05D000087 3.1e-06 54.7 47 48.9
Sabra09G0008700 Salix brachista HOM05D000140 ORTHO05D000087 3.1e-06 54.7 50 54.0
Sp4g11280 Schrenkiella parvula HOM05D000140 ORTHO05D000087 3.1e-06 54.7 57 49.1
TPR.G27539 Trifolium pratense HOM05D000140 ORTHO05D000087 3.1e-06 54.7 45 55.6
vmacro14444 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 3.1e-06 54.7 48 60.4
Actinidia07129 Actinidia chinensis HOM05D000140 ORTHO05D000087 4.1e-06 54.3 54 55.6
arahy.Tifrunner.gnm1.ann1.1YSK8M Arachis hypogaea HOM05D000140 ORTHO05D000087 4.1e-06 54.3 49 57.1
arahy.Tifrunner.gnm1.ann1.2X39TD Arachis hypogaea HOM05D000140 ORTHO05D000087 4.1e-06 54.3 49 57.1
BcaC02g10960 Brassica carinata HOM05D000140 ORTHO05D000087 4.1e-06 54.3 57 52.6
C04p22920 Brassica napus HOM05D000140 ORTHO05D000087 4.1e-06 54.3 57 52.6
BolC4t23786H Brassica oleracea HOM05D000140 ORTHO05D000087 4.1e-06 54.3 57 52.6
CARHR121420 Cardamine hirsuta HOM05D000140 ORTHO05D000087 4.1e-06 54.3 57 52.6
MD03G1114300 Malus domestica HOM05D000140 ORTHO05D000087 4.1e-06 54.3 51 54.9
MD11G1133400 Malus domestica HOM05D000140 ORTHO05D000087 4.1e-06 54.3 51 54.9
Oeu025528.1 Olea europaea HOM05D000140 ORTHO05D000087 4.1e-06 54.3 55 56.4
Phvul.005G135933 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 4.1e-06 54.3 58 55.2
Sed0023060 Sechium edule HOM05D000140 ORTHO05D000087 4.1e-06 54.3 50 52.0
TWI79G1281 Tripterygium wilfordii HOM05D000140 ORTHO05D000087 4.1e-06 54.3 57 54.4
Atru.chr3.3648 Acer truncatum HOM05D000140 ORTHO05D000087 5.3e-06 53.9 50 52.0
CSS0025393 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 5.3e-06 53.9 43 62.8
CSS0032697 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 5.3e-06 53.9 43 62.8
MELO3C015470.2 Cucumis melo HOM05D000140 ORTHO05D000087 5.3e-06 53.9 51 58.8
FvH4_3g32630 Fragaria vesca HOM05D000140 ORTHO05D000087 5.3e-06 53.9 57 50.9
FAN11G3201 Fragaria x ananassa HOM05D000140 ORTHO05D000087 5.3e-06 53.9 57 50.9
FAN21G3227 Fragaria x ananassa HOM05D000140 ORTHO05D000087 5.3e-06 53.9 57 50.9
Lj1A189T50 Lonicera japonica HOM05D000140 ORTHO05D000087 5.3e-06 53.9 32 78.1
Phvul.009G232500 Phaseolus vulgaris HOM05D000140 ORTHO05D000087 5.3e-06 53.9 55 52.7
PGR119G1179 Punica granatum HOM05D000140 ORTHO05D000087 5.3e-06 53.9 47 57.4
RcHm_v2.0_Chr5g0059701 Rosa chinensis HOM05D000140 ORTHO05D000087 5.3e-06 53.9 57 50.9
Sed0007267 Sechium edule HOM05D000140 ORTHO05D000087 5.3e-06 53.9 57 54.4
VMungo1309G1141 Vigna mungo HOM05D000140 ORTHO05D000087 5.3e-06 53.9 55 52.7
Ah.01g015080 Amaranthus hybridus HOM05D000140 ORTHO05D000087 6.9e-06 53.5 53 56.6
MSTRG.18654 Avicennia marina HOM05D000140 ORTHO05D000087 6.9e-06 53.5 53 54.7
EL10Ac9g22500 Beta vulgaris HOM05D000140 ORTHO05D000087 6.9e-06 53.5 53 54.7
CsaV3_1G040410 Cucumis sativus L. HOM05D000140 ORTHO05D000087 6.9e-06 53.5 51 56.9
Glyma.09G062900 Glycine max HOM05D000140 ORTHO05D000087 6.9e-06 53.5 45 53.3
Medtr2g039120 Medicago truncatula HOM05D000140 ORTHO05D000087 6.9e-06 53.5 44 59.1
SalBow3G2020 Salvia bowleyana HOM05D000140 ORTHO05D000087 6.9e-06 53.5 55 54.5
Actinidia03738 Actinidia chinensis HOM05D000140 ORTHO05D000087 9.0e-06 53.1 49 57.1
arahy.Tifrunner.gnm1.ann1.N9QT7E Arachis hypogaea HOM05D000140 ORTHO05D000087 9.0e-06 53.1 44 54.5
Ca_02154_v3 Cicer arietinum L. HOM05D000140 ORTHO05D000087 9.0e-06 53.1 51 56.9
Migut.D02205 Erythranthe guttata HOM05D000140 ORTHO05D000087 9.0e-06 53.1 48 56.2
Glyma.13G327000 Glycine max HOM05D000140 ORTHO05D000087 9.0e-06 53.1 57 52.6
MBI05_g44759_MAGBIO Magnolia biondii HOM05D000140 ORTHO05D000087 9.0e-06 53.1 46 56.5


User provided reference genes

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