Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 6.0e-61 237.3 116 100.0
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 7.6e-56 220.3 116 89.7
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 1.3e-55 219.5 116 87.9
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.3e-55 219.5 116 87.9
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 2.9e-55 218.4 116 87.9
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 2.9e-55 218.4 116 87.9
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 2.9e-55 218.4 116 87.9
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 2.9e-55 218.4 116 87.9
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 6.5e-55 217.2 116 88.8
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 6.5e-55 217.2 116 87.1
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 6.5e-55 217.2 116 87.9
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 8.4e-55 216.9 116 87.9
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 8.4e-55 216.9 116 88.8
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 8.4e-55 216.9 116 87.9
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 1.1e-54 216.5 109 93.6
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 1.1e-54 216.5 116 86.2
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 1.1e-54 216.5 116 88.8
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.1e-54 216.5 116 88.8
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.1e-54 216.5 116 88.8
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.1e-54 216.5 115 87.8
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.1e-54 216.5 116 87.9
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.4e-54 216.1 116 88.8
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.9e-54 215.7 116 87.1
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.9e-54 215.7 117 89.7
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 1.9e-54 215.7 116 87.1
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.5e-54 215.3 116 87.1
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 2.5e-54 215.3 116 87.1
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 3.2e-54 214.9 108 92.6
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 3.2e-54 214.9 108 92.6
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 3.2e-54 214.9 116 86.2
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.2e-54 214.9 116 87.9
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.2e-54 214.9 116 87.9
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 3.2e-54 214.9 116 90.5
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.2e-54 214.9 116 87.9
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 4.2e-54 214.5 116 86.2
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 4.2e-54 214.5 110 91.8
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 4.2e-54 214.5 115 86.1
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 4.2e-54 214.5 116 86.2
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 5.5e-54 214.2 109 89.0
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 5.5e-54 214.2 116 87.1
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 5.5e-54 214.2 116 88.8
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 5.5e-54 214.2 114 86.8
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 5.5e-54 214.2 111 88.3
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 7.1e-54 213.8 116 86.2
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.1e-54 213.8 116 89.7
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 7.1e-54 213.8 116 87.1
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.2e-53 213.0 116 86.2
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.2e-53 213.0 108 92.6
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 1.2e-53 213.0 116 88.8
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 1.6e-53 212.6 110 90.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.6e-53 212.6 116 87.9
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 2.1e-53 212.2 114 86.0
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 2.1e-53 212.2 109 89.9
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 2.1e-53 212.2 109 93.6
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 2.1e-53 212.2 116 86.2
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 2.7e-53 211.8 110 89.1
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 2.7e-53 211.8 110 90.0
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.7e-53 211.8 108 91.7
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 2.7e-53 211.8 108 91.7
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 3.5e-53 211.5 110 89.1
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 3.5e-53 211.5 110 89.1
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 3.5e-53 211.5 110 89.1
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 3.5e-53 211.5 110 89.1
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 3.5e-53 211.5 107 92.5
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 3.5e-53 211.5 114 87.7
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 3.5e-53 211.5 108 90.7
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 4.6e-53 211.1 111 90.1
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 6.1e-53 210.7 113 86.7
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 7.9e-53 210.3 116 84.5
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 1.0e-52 209.9 116 83.6
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.0e-52 209.9 114 86.0
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.3e-52 209.5 110 88.2
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.3e-52 209.5 110 88.2
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.3e-52 209.5 119 86.6
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 1.8e-52 209.1 108 88.9
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 2.3e-52 208.8 110 87.3
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 2.3e-52 208.8 110 87.3
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 3.0e-52 208.4 110 87.3
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 3.0e-52 208.4 116 83.6
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 3.9e-52 208.0 108 89.8
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.9e-52 208.0 116 81.9
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 3.9e-52 208.0 108 89.8
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 3.9e-52 208.0 108 89.8
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 6.7e-52 207.2 115 83.5
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 8.7e-52 206.8 107 88.8
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.7e-52 206.8 116 81.0
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 8.7e-52 206.8 108 88.9
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 8.7e-52 206.8 115 83.5
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.5e-51 206.1 113 86.7
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 1.5e-51 206.1 108 88.0
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.5e-51 206.1 116 81.9
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 5.7e-51 204.1 116 81.0
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 7.4e-51 203.8 112 84.8
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.6e-50 202.6 116 79.3
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 2.8e-50 201.8 105 89.5
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.7e-50 201.4 116 78.4
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 8.2e-50 200.3 108 86.1
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 1.1e-49 199.9 106 85.8
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.4e-49 199.5 110 80.9
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 2.4e-49 198.7 107 86.0
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 2.4e-49 198.7 105 87.6
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 5.3e-49 197.6 113 82.3
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.5e-48 196.1 109 83.5
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.3e-47 193.0 104 83.7
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 2.2e-47 192.2 107 80.4
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.9e-47 191.8 105 81.9
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 5.0e-47 191.0 108 82.4
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.4e-46 189.5 105 83.8
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 2.1e-45 185.7 100 88.0
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 3.6e-45 184.9 105 81.0
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 6.1e-45 184.1 117 75.2
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 3.0e-44 181.8 115 73.9
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 8.8e-44 180.3 105 78.1
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.1e-43 179.9 106 79.2
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 4.3e-43 177.9 108 78.7
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 9.7e-43 176.8 105 77.1
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 9.7e-43 176.8 105 73.3
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 9.7e-43 176.8 103 79.6
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 9.7e-43 176.8 106 78.3
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 1.3e-42 176.4 111 74.8
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 4.8e-42 174.5 103 78.6
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 2.0e-40 169.1 119 70.6
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 5.9e-40 167.5 103 76.7
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 1.0e-39 166.8 103 74.8
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 1.1e-38 163.3 107 75.7
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 1.4e-38 162.9 110 73.6
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 2.5e-38 162.2 102 72.5
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 3.2e-38 161.8 106 70.8
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 2.3e-36 155.6 84 84.5
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 3.9e-36 154.8 102 69.6
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 5.1e-36 154.5 105 66.7
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.5e-35 152.9 116 66.4
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 4.4e-35 151.4 89 80.9
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 5.7e-35 151.0 108 69.4
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.7e-34 149.4 105 67.6
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 1.4e-33 146.4 105 63.8
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 4.1e-33 144.8 101 68.3
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.2e-32 143.3 103 61.2
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.5e-32 141.4 109 58.7
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.5e-32 141.4 109 58.7
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.5e-32 141.4 109 58.7
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.5e-32 141.4 109 58.7
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.5e-32 141.4 109 58.7
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 2.9e-31 138.7 104 66.3
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 2.9e-31 138.7 107 59.8
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.2e-30 135.2 110 60.9
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.2e-30 135.2 110 60.9
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 5.7e-27 124.4 65 92.3
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 2.4e-25 119.0 115 53.9
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.2e-24 116.7 65 78.5
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 5.9e-24 114.4 106 50.9
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 8.5e-23 110.5 54 94.4
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.1e-22 110.2 57 87.7
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.5e-22 109.8 56 91.1
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 1.5e-22 109.8 69 78.3
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.9e-22 109.4 54 92.6
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 2.7e-21 105.5 55 85.5
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 4.7e-21 104.8 54 88.9
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 2.4e-17 92.4 54 81.5
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 3.1e-17 92.0 57 73.7
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.7e-16 87.4 48 85.4
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 2.1e-13 79.3 51 74.5
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 3.6e-13 78.6 42 85.7
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.4e-09 65.9 33 90.9
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 2.7e-08 62.4 30 93.3
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.7e-08 62.4 30 93.3


User provided reference genes

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