Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 0.0e+00 1625.5 1312 100.0
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 2.8e-199 700.3 1330 56.5
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.1e-195 688.3 1379 52.9
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 5.6e-187 659.4 1320 52.0
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 3.7e-183 646.7 1365 55.2
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 3.2e-182 643.7 1323 53.9
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 5.4e-182 642.9 1383 43.5
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 7.0e-182 642.5 1517 48.8
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 4.6e-181 639.8 1330 51.0
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 9.5e-179 632.1 1304 51.8
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 2.0e-176 624.4 1331 48.6
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 3.4e-176 623.6 1331 48.6
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 9.9e-176 622.1 1386 48.5
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.9e-174 617.8 1348 49.4
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 4.6e-173 613.2 1328 48.9
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 5.1e-172 609.8 1388 53.1
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 2.8e-170 604.0 1534 41.5
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 6.2e-170 602.8 1297 50.7
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 9.2e-166 589.0 1321 45.6
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 4.6e-165 586.6 1382 47.2
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 1.3e-164 585.1 1323 46.9
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 9.6e-163 578.9 1376 47.3
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.7e-162 576.6 1422 44.5
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 3.4e-160 570.5 1120 43.0
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 5.8e-160 569.7 1347 45.2
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 1.0e-156 558.9 1386 46.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 1.1e-155 555.4 1387 48.4
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 1.1e-155 555.4 1285 48.3
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.6e-154 551.6 1325 45.6
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.1e-154 551.2 1329 44.1
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 5.8e-152 543.1 1328 43.6
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 9.3e-150 535.8 1514 44.2
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 1.6e-149 535.0 1382 50.9
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 6.0e-149 533.1 1346 43.8
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 7.4e-147 526.2 1385 50.0
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 2.8e-146 524.2 1344 45.8
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.1e-145 522.3 1302 50.9
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 1.4e-145 521.9 1322 44.3
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 5.3e-145 520.0 1328 44.8
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.2e-144 518.8 1362 43.5
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 9.9e-144 515.8 1384 47.2
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.4e-142 511.9 1342 47.1
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 9.3e-142 509.2 1271 45.7
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.8e-140 505.0 1379 50.2
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 3.9e-140 503.8 1528 39.3
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 2.5e-139 501.1 1330 51.1
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 7.4e-139 499.6 1379 49.7
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 6.2e-138 496.5 1384 48.3
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.8e-137 495.0 1345 43.4
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.4e-137 494.6 1379 50.4
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 7.6e-136 489.6 1380 47.6
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.9e-135 487.6 1303 47.7
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 5.5e-134 483.4 1333 42.5
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 9.3e-134 482.6 1303 47.7
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 4.6e-133 480.3 1583 38.3
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.5e-131 475.3 1363 48.9
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 4.3e-131 473.8 1470 40.7
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 4.3e-131 473.8 1547 38.1
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.8e-130 470.3 1316 46.7
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.1e-129 467.6 942 57.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.0e-127 462.6 1333 47.6
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.5e-126 458.0 1339 47.7
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 1.2e-125 455.7 1383 47.7
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 7.9e-125 453.0 1093 38.5
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.5e-120 438.7 1615 33.4
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 3.8e-119 434.1 1385 44.5
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 5.0e-119 433.7 1389 46.2
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 7.2e-118 429.9 1524 41.4
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 2.7e-117 427.9 1587 35.3
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.7e-115 420.2 1339 45.3
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.3e-114 419.1 1339 45.7
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 2.4e-113 414.8 1303 44.2
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.6e-107 394.8 1316 43.8
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.6e-107 394.8 1316 43.8
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 2.6e-107 394.8 1034 34.1
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 2.5e-102 378.3 1330 37.1
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 1.6e-101 375.6 1345 45.7
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 5.2e-100 370.5 619 43.1
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 8.5e-95 353.2 1385 46.1
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 2.1e-93 348.6 1538 37.1
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.3e-90 339.3 1699 31.1
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 9.1e-89 333.2 1323 39.7
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 2.8e-85 321.6 1836 30.4
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.7e-82 312.4 508 43.3
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 6.3e-82 310.5 1395 38.4
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 1.6e-77 295.8 1319 38.7
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.8e-76 292.4 1399 42.4
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 2.3e-76 292.0 1449 37.4
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 2.6e-75 288.5 1373 37.1
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.0e-71 275.0 648 32.9
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 3.3e-70 271.6 619 36.3
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 2.4e-65 255.4 1316 38.7
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.6e-64 252.7 335 49.3
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.6e-64 252.7 1325 44.6
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 3.5e-64 251.5 424 44.6
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.6e-61 242.7 1374 30.5
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 4.7e-61 241.1 1370 37.6
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 2.8e-53 215.3 284 48.2
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 3.4e-51 208.4 298 46.0
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.7e-50 206.1 516 32.2
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.2e-50 205.7 233 56.7
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 2.2e-50 205.7 242 50.0
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.9e-50 204.5 460 37.6
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 8.4e-50 203.8 501 34.3
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.1e-49 203.4 864 36.3
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 7.8e-48 197.2 403 38.7
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.3e-47 196.4 588 37.4
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 5.1e-47 194.5 612 35.8
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 6.6e-47 194.1 580 34.1
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 6.6e-47 194.1 416 39.9
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 6.4e-42 177.6 638 31.0
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.1e-41 176.8 635 30.4
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 3.0e-39 168.7 594 29.0
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 6.6e-39 167.5 589 35.7
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 4.3e-38 164.9 340 41.5
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.8e-37 161.4 417 36.0
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-36 159.8 482 33.6
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.4e-36 159.8 276 40.6
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 1.7e-34 152.9 229 44.1
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 3.8e-34 151.8 580 34.8
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 6.4e-34 151.0 1369 42.5
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.5e-32 145.2 562 32.4
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.5e-30 139.0 311 39.2
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.3e-29 136.7 447 32.9
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.3e-29 136.7 447 32.9
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 1.8e-28 132.9 1277 26.6
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 2.4e-28 132.5 182 46.2
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 3.1e-28 132.1 624 27.4
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 9.0e-28 130.6 616 28.2
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.0e-27 129.4 447 31.8
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 3.4e-27 128.6 428 26.9
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 2.2e-26 125.9 334 35.6
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.3e-23 116.7 1326 27.8
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 5.1e-23 114.8 1190 27.1
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 2.5e-22 112.5 411 29.0
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.8e-20 106.3 199 42.2
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.4e-19 102.1 161 43.5
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.4e-19 102.1 161 43.5
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 3.4e-19 102.1 114 50.9
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 4.5e-19 101.7 536 27.2
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 5.8e-19 101.3 228 39.5
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.4e-17 96.7 321 31.5
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 2.5e-17 95.9 118 53.4
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 3.2e-17 95.5 235 37.0
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.6e-16 93.2 460 27.6
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.7e-16 92.4 261 33.0
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 3.5e-16 92.0 609 25.8
Cc04_g04110 Coffea canephora HOM05D003806 ORTHO05D004346 6.1e-16 91.3 57 93.0
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.9e-16 90.9 261 32.6
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 2.3e-15 89.4 284 29.9
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 6.7e-15 87.8 83 61.4
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 1.5e-14 86.7 617 26.3
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.5e-14 85.9 614 25.4
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 2.5e-14 85.9 272 34.6
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 4.8e-13 81.6 270 31.9
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 4.8e-13 81.6 107 49.5
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 6.3e-13 81.3 303 32.0
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 6.3e-13 81.3 303 32.0
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 4.1e-12 78.6 351 29.3
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 5.3e-12 78.2 250 34.8
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 1.2e-11 77.0 575 26.1
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 4.5e-11 75.1 414 24.9
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 7.7e-11 74.3 320 30.9
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.0e-10 73.9 168 41.7
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 2.9e-10 72.4 308 30.2
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 5.0e-10 71.6 605 25.1
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 2.5e-09 69.3 480 24.8
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.4e-07 63.5 183 30.6
Oeu030768.1 Olea europaea HOM05D003806 ORTHO05D004346 1.8e-07 63.2 126 43.7
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.3e-07 62.8 409 23.5
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 3.0e-07 62.4 52 63.5
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 1.1e-06 60.5 107 40.2
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 1.1e-06 60.5 89 41.6
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.5e-06 60.1 574 27.7
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 3.3e-06 58.9 579 27.6
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 7.4e-06 57.8 282 27.3


User provided reference genes

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