Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 8.3e-134 480.3 236 100.0
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 3.7e-73 278.9 224 67.9
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 1.4e-72 276.9 223 67.7
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.5e-71 273.5 224 66.1
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.5e-71 273.5 224 65.6
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 2.0e-71 273.1 224 67.4
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 2.6e-71 272.7 224 66.1
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 2.6e-71 272.7 224 66.1
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 7.7e-71 271.2 224 66.1
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 1.7e-70 270.0 223 65.5
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 2.2e-70 269.6 224 65.2
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 2.2e-70 269.6 224 64.7
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 2.9e-70 269.2 224 66.1
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 2.9e-70 269.2 223 64.1
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 2.9e-70 269.2 224 65.2
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 2.9e-70 269.2 224 65.2
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 2.9e-70 269.2 223 65.5
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 3.8e-70 268.9 223 67.3
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 3.8e-70 268.9 224 64.3
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 5.0e-70 268.5 224 65.6
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 5.0e-70 268.5 223 65.0
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 5.0e-70 268.5 224 66.5
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 6.5e-70 268.1 224 65.2
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 6.5e-70 268.1 224 64.3
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 8.5e-70 267.7 223 65.0
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 8.5e-70 267.7 223 65.0
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 8.5e-70 267.7 223 65.0
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 8.5e-70 267.7 224 64.7
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.1e-69 267.3 224 64.3
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.1e-69 267.3 223 66.4
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 1.1e-69 267.3 223 65.0
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 1.4e-69 266.9 224 64.3
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.4e-69 266.9 224 64.3
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.4e-69 266.9 223 65.9
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.4e-69 266.9 223 65.9
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 1.4e-69 266.9 224 64.3
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 1.4e-69 266.9 223 65.5
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 1.9e-69 266.5 223 66.8
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 1.9e-69 266.5 224 64.7
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 1.9e-69 266.5 234 62.8
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 1.9e-69 266.5 224 63.8
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.9e-69 266.5 224 63.8
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 1.9e-69 266.5 224 64.7
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.9e-69 266.5 224 64.3
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 2.5e-69 266.2 223 65.0
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 2.5e-69 266.2 223 65.0
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.5e-69 266.2 224 63.8
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.5e-69 266.2 223 65.9
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 2.5e-69 266.2 234 62.8
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 3.2e-69 265.8 223 64.6
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 3.2e-69 265.8 223 64.6
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 4.2e-69 265.4 224 64.7
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 4.2e-69 265.4 224 65.2
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 5.5e-69 265.0 223 65.0
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 5.5e-69 265.0 224 64.3
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 7.2e-69 264.6 234 62.4
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 7.2e-69 264.6 234 62.4
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 7.2e-69 264.6 223 65.5
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 7.2e-69 264.6 234 62.4
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 7.2e-69 264.6 224 63.8
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 7.2e-69 264.6 224 64.3
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 7.2e-69 264.6 224 63.8
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 7.2e-69 264.6 223 64.6
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 9.4e-69 264.2 223 64.1
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 9.4e-69 264.2 223 64.1
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 9.4e-69 264.2 223 64.1
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 9.4e-69 264.2 224 63.4
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 9.4e-69 264.2 224 63.4
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 9.4e-69 264.2 224 63.8
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 9.4e-69 264.2 223 64.1
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 1.2e-68 263.8 223 64.1
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 1.2e-68 263.8 223 64.1
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 1.2e-68 263.8 223 64.1
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 1.2e-68 263.8 223 64.1
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 1.2e-68 263.8 223 65.0
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.2e-68 263.8 223 65.0
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 1.2e-68 263.8 223 65.0
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 1.2e-68 263.8 223 64.6
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 1.6e-68 263.5 223 65.5
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.6e-68 263.5 227 64.8
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.6e-68 263.5 223 64.1
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 1.6e-68 263.5 223 65.0
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 1.6e-68 263.5 228 63.2
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.6e-68 263.5 224 63.8
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.6e-68 263.5 224 63.8
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 2.1e-68 263.1 223 64.6
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 2.1e-68 263.1 223 65.0
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 2.1e-68 263.1 224 64.3
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.1e-68 263.1 227 63.4
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 2.1e-68 263.1 223 63.7
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 2.1e-68 263.1 227 63.4
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 2.7e-68 262.7 224 62.9
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 2.7e-68 262.7 223 65.0
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 2.7e-68 262.7 224 64.7
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 3.6e-68 262.3 223 64.1
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 3.6e-68 262.3 223 63.7
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 4.7e-68 261.9 224 64.7
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 6.1e-68 261.5 223 65.5
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 6.1e-68 261.5 223 64.1
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 7.9e-68 261.2 223 63.2
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 7.9e-68 261.2 223 63.7
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 1.0e-67 260.8 234 61.5
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 1.0e-67 260.8 223 63.2
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 1.0e-67 260.8 222 64.9
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 1.4e-67 260.4 223 63.7
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.4e-67 260.4 224 62.1
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 1.4e-67 260.4 223 63.2
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 1.4e-67 260.4 224 63.4
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 3.0e-67 259.2 223 63.2
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 5.1e-67 258.5 223 62.8
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 5.1e-67 258.5 222 63.1
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 5.1e-67 258.5 223 62.8
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 6.7e-67 258.1 234 60.3
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 6.7e-67 258.1 222 62.2
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.1e-66 257.3 224 64.7
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.1e-66 257.3 222 62.2
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 1.5e-66 256.9 234 60.3
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 2.0e-66 256.5 224 61.6
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 2.6e-66 256.1 227 63.9
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.2e-65 253.1 225 62.2
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.2e-65 253.1 225 62.2
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.7e-65 252.3 223 63.2
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 2.4e-64 249.6 224 61.2
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 4.1e-64 248.8 225 59.1
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 4.1e-64 248.8 222 60.8
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 9.1e-64 247.7 234 59.0
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 1.2e-63 247.3 227 59.0
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.2e-63 247.3 224 58.9
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 1.5e-63 246.9 227 59.0
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 2.6e-63 246.1 223 58.7
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 3.5e-63 245.7 223 60.1
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 5.9e-63 245.0 223 60.1
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 5.9e-63 245.0 223 59.2
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 5.9e-63 245.0 234 57.7
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 7.7e-63 244.6 223 58.7
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.0e-62 244.2 224 59.8
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.0e-62 244.2 223 59.2
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.7e-62 243.4 224 60.3
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.2e-62 243.0 223 62.3
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.2e-62 243.0 223 62.3
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.8e-62 242.3 225 59.6
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.8e-62 242.3 225 59.6
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 6.5e-62 241.5 223 59.2
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 8.5e-62 241.1 236 59.7
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.1e-61 240.7 224 58.5
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 1.5e-61 240.4 223 59.2
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 3.2e-61 239.2 223 58.3
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 4.2e-61 238.8 223 59.2
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 5.5e-61 238.4 223 58.3
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 9.4e-61 237.7 225 57.8
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 4.7e-60 235.3 223 60.1
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.0e-59 234.2 227 55.1
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 9.1e-56 221.1 223 55.2
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 3.8e-54 215.7 233 52.4
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 2.3e-51 206.5 224 50.4
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 2.0e-50 203.4 190 58.4
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 2.6e-50 203.0 187 59.9
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 1.1e-48 197.6 234 47.9
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 5.4e-48 195.3 190 58.9
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 7.7e-47 191.4 203 55.2
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 4.2e-45 185.7 186 54.8
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 1.4e-43 180.6 224 48.7
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.2e-42 177.6 92 94.6
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.8e-40 170.2 217 48.8
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 2.5e-37 159.8 85 91.8
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 1.0e-35 154.5 81 91.4
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.7e-30 137.1 71 94.4
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 1.1e-29 134.4 85 82.4
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.1e-29 134.4 88 75.0
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 3.5e-23 112.8 223 37.7
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 2.8e-20 103.2 59 83.1
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 1.6e-15 87.4 51 82.4
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.6e-15 87.4 51 84.3
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 1.6e-15 87.4 51 84.3
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 8.6e-14 81.6 49 85.7
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 1.4e-11 74.3 36 94.4
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 6.4e-09 65.5 103 45.6


User provided reference genes

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