Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 2.7e-299 1031.2 496 100.0
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 9.1e-215 750.4 436 79.1
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.1e-212 743.4 436 78.9
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.9e-212 742.7 436 79.1
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.5e-212 742.3 436 79.6
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 4.2e-212 741.5 436 79.1
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 7.2e-212 740.7 436 78.0
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 2.1e-211 739.2 436 78.9
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 6.1e-211 737.6 436 79.1
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 7.9e-211 737.3 436 78.7
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 3.0e-210 735.3 436 78.4
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 3.0e-210 735.3 436 78.9
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 3.0e-210 735.3 436 78.9
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.1e-210 734.6 436 78.0
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.1e-209 733.4 436 78.7
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.6e-209 732.3 436 78.2
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 3.3e-209 731.9 437 78.0
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 3.3e-209 731.9 436 76.8
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 7.4e-209 730.7 436 77.3
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 7.4e-209 730.7 436 77.5
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 3.7e-208 728.4 436 78.4
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 3.7e-208 728.4 431 79.1
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.7e-208 728.4 436 78.0
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 6.3e-208 727.6 436 77.3
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 8.2e-208 727.2 436 77.8
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.8e-207 726.1 459 74.3
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 3.1e-207 725.3 436 76.4
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 9.1e-207 723.8 436 75.9
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.2e-206 723.4 436 77.5
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 2.6e-206 722.2 436 76.4
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 2.2e-205 719.2 436 77.3
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 2.9e-205 718.8 436 75.5
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.5e-204 716.5 436 76.4
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.5e-204 715.7 436 76.4
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.5e-204 715.7 436 76.8
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.2e-204 715.3 436 76.6
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 7.2e-204 714.1 436 76.8
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.2e-203 713.4 421 78.6
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 3.6e-203 711.8 436 74.8
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 3.6e-203 711.8 436 75.7
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 6.1e-203 711.1 436 75.2
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 8.0e-203 710.7 436 75.2
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 1.0e-202 710.3 431 75.9
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 1.8e-202 709.5 436 74.5
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.3e-202 709.1 436 75.2
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.3e-202 709.1 456 73.2
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 5.2e-202 708.0 436 74.3
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 6.7e-202 707.6 436 75.0
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 1.1e-201 706.8 436 75.2
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.1e-201 706.8 436 75.2
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 1.1e-201 706.8 436 75.2
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 1.5e-201 706.4 436 75.2
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 2.0e-201 706.1 436 75.0
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 2.6e-201 705.7 437 74.4
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 3.3e-201 705.3 443 74.5
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 3.3e-201 705.3 436 75.7
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 4.4e-201 704.9 436 75.9
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 4.4e-201 704.9 436 74.8
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 7.5e-201 704.1 421 77.7
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 9.7e-201 703.7 456 73.0
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.3e-200 703.4 436 74.5
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 2.8e-200 702.2 437 74.1
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.8e-200 701.4 436 74.5
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 4.8e-200 701.4 436 73.9
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 4.8e-200 701.4 510 66.7
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 1.4e-199 699.9 436 73.6
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 3.1e-199 698.7 436 73.9
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 3.1e-199 698.7 459 72.3
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 3.1e-199 698.7 436 74.1
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 9.1e-199 697.2 514 65.2
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 9.1e-199 697.2 456 72.4
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.2e-198 696.8 438 74.0
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 1.7e-197 693.0 436 72.9
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 2.2e-197 692.6 436 73.6
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 2.2e-197 692.6 414 77.3
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 2.9e-197 692.2 436 73.4
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 6.5e-197 691.0 436 73.2
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 6.5e-197 691.0 436 72.9
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.1e-196 690.3 436 73.2
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 5.5e-196 688.0 436 72.2
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.6e-195 686.4 436 73.9
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 2.1e-195 686.0 436 72.2
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 2.7e-195 685.6 436 74.5
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 4.0e-194 681.8 436 72.2
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.5e-193 679.9 436 72.5
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 2.0e-193 679.5 436 70.9
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 5.7e-193 677.9 414 76.8
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 7.5e-193 677.6 436 73.4
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 9.8e-193 677.2 458 71.6
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.3e-192 676.8 436 72.7
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 2.8e-192 675.6 454 69.4
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 6.3e-192 674.5 436 72.5
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 8.3e-192 674.1 436 72.7
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.7e-190 669.1 436 72.2
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.7e-190 669.1 436 71.6
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.5e-190 668.3 427 74.9
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 5.9e-190 667.9 436 72.0
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.0e-189 667.2 436 72.0
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.2e-189 666.0 436 71.3
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 1.9e-188 662.9 545 61.1
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.1e-187 659.4 416 74.0
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 1.6e-179 633.3 437 69.3
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 4.4e-177 625.2 435 66.7
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 9.2e-175 617.5 414 70.8
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 1.2e-174 617.1 414 70.5
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 8.6e-173 610.9 437 66.4
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.3e-172 609.0 435 65.7
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 9.5e-172 607.4 358 79.1
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 3.6e-171 605.5 434 64.7
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 1.5e-169 600.1 435 65.3
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 9.2e-167 590.9 435 64.4
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 6.0e-166 588.2 415 65.8
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 7.8e-166 587.8 439 62.2
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.3e-160 570.5 435 63.4
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.7e-158 562.8 430 62.8
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 7.8e-158 561.2 434 63.6
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 7.3e-156 554.7 327 78.6
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.2e-153 547.4 430 61.4
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.3e-149 533.9 316 77.8
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 8.6e-149 531.2 323 76.2
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.1e-148 530.8 438 59.8
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 6.2e-131 471.9 283 78.4
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 1.0e-125 454.5 326 66.9
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 4.9e-120 435.6 418 52.4
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 6.9e-114 415.2 477 46.8
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.7e-112 410.6 316 64.2
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 1.8e-109 400.6 262 69.5
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 3.0e-109 399.8 246 77.2
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.1e-98 362.8 261 65.1
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 4.2e-87 326.2 260 58.1
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 2.3e-85 320.5 296 56.4
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 2.3e-85 320.5 214 66.8
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 2.8e-70 270.4 220 58.6
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 1.4e-69 268.1 172 73.3
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 4.7e-54 216.5 164 64.6
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 6.8e-53 212.6 144 69.4
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 2.3e-48 197.6 110 84.5
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.5e-44 184.9 113 76.1
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 3.0e-40 170.6 94 89.4
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 3.3e-39 167.2 153 58.8
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 5.2e-37 159.8 173 52.6
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 7.6e-36 156.0 91 76.9
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 6.4e-35 152.9 115 67.0
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.4e-29 134.4 129 55.8
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 7.1e-18 96.3 113 52.2
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.3e-14 85.5 57 56.1
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 9.9e-12 75.9 56 67.9


User provided reference genes

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