Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1989.9 999 100.0
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1709.9 996 85.0
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1708.7 995 85.0
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1702.2 995 85.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1701.0 996 84.3
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1699.5 995 84.6
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1697.6 1005 84.0
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1696.4 1004 84.4
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1696.0 993 84.9
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1694.1 997 84.1
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1692.6 995 83.3
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1691.4 995 84.6
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1690.2 995 84.5
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1684.1 1004 84.0
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1684.1 992 84.0
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1682.9 997 83.8
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 996 83.7
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 995 83.5
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1678.7 996 82.8
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1677.9 998 82.9
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1676.8 995 83.0
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1676.0 995 83.8
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1675.6 996 82.9
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1675.2 996 83.4
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1674.1 995 83.4
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1673.7 995 83.8
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1672.1 995 84.6
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1671.4 996 82.7
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1671.4 996 83.4
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1668.7 995 83.3
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1668.3 996 82.4
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1667.5 998 82.2
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1662.5 997 82.2
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1660.6 1031 81.2
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1659.4 995 82.2
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1659.0 1003 83.3
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1657.5 1019 81.6
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1657.1 1019 81.6
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1656.0 998 81.9
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1653.3 996 83.4
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 1022 80.1
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1645.6 996 81.5
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1645.6 995 82.2
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1643.6 997 81.6
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1643.2 997 80.9
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1641.3 1019 80.9
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1640.9 996 81.5
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1631.3 1011 80.0
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1626.7 994 81.1
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1625.9 998 80.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1619.0 1091 75.3
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1619.0 993 80.0
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1618.6 997 79.7
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1615.5 998 80.5
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1611.3 1084 75.3
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1610.1 998 81.4
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1608.6 997 80.0
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1607.4 997 79.6
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1605.1 997 80.6
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1604.3 997 79.3
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1602.8 997 80.7
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1602.4 997 79.2
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1602.0 998 79.3
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1598.9 999 79.1
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1595.1 997 80.0
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1593.2 998 78.5
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 997 78.4
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1588.9 943 82.7
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1587.8 997 78.4
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1586.6 1009 77.9
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1584.7 999 78.6
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1583.2 1002 78.5
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1583.2 996 80.4
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1581.6 1012 77.2
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1575.5 995 78.6
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1573.1 1004 78.7
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1569.3 995 77.5
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1569.3 1012 76.9
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1564.3 986 79.1
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1563.9 1014 76.5
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1552.7 997 77.3
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1543.1 943 80.8
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1540.0 1034 75.9
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1537.3 1048 73.8
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1535.8 1027 75.3
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1510.7 990 75.3
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1509.6 995 77.1
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1503.0 937 81.1
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1489.9 995 75.2
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1449.1 905 78.8
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1444.9 993 72.7
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1413.7 855 81.9
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1404.0 814 85.7
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1391.3 988 70.6
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1371.3 869 80.7
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1365.9 792 86.0
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1327.8 794 82.7
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1326.6 1002 71.4
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1318.9 760 86.6
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1302.3 759 85.4
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1302.0 768 83.9
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1296.6 801 80.8
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1295.8 791 82.0
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1279.6 958 68.1
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1191.4 779 77.2
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1177.2 991 60.1
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1169.5 761 78.4
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1165.6 998 59.9
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 2.0e-298 1029.2 996 52.4
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.3e-297 1025.8 620 82.4
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 1.5e-288 996.5 799 62.0
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.9e-288 996.1 676 75.0
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 9.5e-288 993.8 651 76.8
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 2.0e-282 976.1 555 87.4
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.1e-258 896.3 583 77.7
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 6.2e-255 884.8 514 86.8
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 6.2e-247 858.2 528 79.9
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 7.9e-242 841.3 620 66.6
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 5.9e-205 718.8 427 80.3
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 3.2e-166 590.1 345 83.5
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.0e-160 570.9 334 84.7
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.2e-145 519.6 282 90.4
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 3.2e-126 457.2 1063 31.4
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 4.8e-122 443.4 249 88.8
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 1.1e-107 395.6 239 79.5
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-104 385.6 268 76.5
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 5.0e-103 380.2 1053 28.2
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 5.0e-103 380.2 1270 27.0
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.6e-101 375.2 240 74.6
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 2.5e-94 351.3 213 80.3
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 2.8e-90 337.8 216 75.9
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 2.9e-87 327.8 240 67.1
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 8.2e-82 309.7 225 67.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.2e-80 305.8 198 74.2
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.0e-76 292.7 284 56.3
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.4e-73 282.3 211 68.2
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 8.8e-68 263.1 450 37.6
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 2.2e-66 258.5 162 75.9
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 2.2e-58 231.9 126 82.5
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 1.1e-57 229.6 161 70.2
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 8.6e-47 193.4 131 70.2
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 1.1e-41 176.4 163 58.3
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 2.4e-41 175.3 119 71.4
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.5e-40 171.4 182 57.1
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.8e-37 161.8 94 80.9
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.2e-35 156.4 113 68.1
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.0e-35 155.6 99 76.8
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.1e-33 149.8 88 80.7
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.1e-32 145.6 95 74.7
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.5e-30 138.7 87 82.8
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 8.9e-28 130.2 70 90.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.2e-27 129.8 131 59.5
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.5e-27 129.4 81 71.6
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.6e-27 128.6 127 59.8
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-23 116.3 104 60.6
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.5e-22 112.8 108 57.4
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-22 112.5 80 80.0
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.6e-22 110.9 91 63.7
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.3e-21 109.8 84 64.3
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.9e-17 95.9 52 84.6
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.4e-17 95.5 54 83.3
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.7e-16 92.0 106 46.2
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 3.7e-13 81.6 109 44.0
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 2.4e-12 79.0 233 23.6
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.2e-11 76.6 47 66.0
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 2.6e-11 75.5 160 33.1
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 7.1e-09 67.4 67 52.2
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 1.0e-07 63.5 61 55.7


User provided reference genes

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