Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 2.2e-249 865.9 735 100.0
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 8.9e-126 455.3 677 76.4
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 1.2e-117 428.3 748 69.9
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 4.4e-117 426.4 726 67.9
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 6.4e-116 422.5 717 67.4
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 6.4e-116 422.5 669 75.0
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 4.6e-114 416.4 627 78.1
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 7.8e-114 415.6 719 71.8
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 1.3e-113 414.8 679 73.8
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 1.7e-113 414.5 730 69.9
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 8.7e-113 412.1 721 70.5
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.1e-112 411.8 716 71.6
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 2.5e-112 410.6 715 71.2
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.3e-111 408.3 750 68.0
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 4.8e-111 406.4 745 67.9
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.2e-111 406.0 743 68.0
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 8.1e-111 405.6 708 70.8
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.8e-110 404.4 724 69.3
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 3.1e-110 403.7 724 71.0
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 5.3e-110 402.9 722 71.2
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 2.2e-108 397.5 723 67.9
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 3.8e-108 396.7 623 77.7
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 4.2e-107 393.3 728 69.4
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 9.3e-107 392.1 661 74.3
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 9.3e-107 392.1 623 77.7
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 3.9e-105 386.7 725 68.8
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 5.1e-105 386.3 719 66.1
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 1.9e-104 384.4 669 72.3
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 2.5e-104 384.0 567 82.2
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 3.3e-104 383.6 719 68.7
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 3.3e-104 383.6 733 64.3
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 4.3e-104 383.3 677 72.5
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 5.6e-104 382.9 670 73.1
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 2.8e-103 380.6 731 65.8
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.8e-103 380.6 670 72.7
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 4.8e-103 379.8 637 71.9
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.8e-102 377.9 628 76.1
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 6.9e-102 375.9 709 69.7
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.0e-101 374.4 708 69.4
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.6e-101 374.0 621 65.5
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 1.3e-100 371.7 708 69.1
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.2e-100 370.9 711 68.4
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 2.9e-100 370.5 715 68.0
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 6.4e-100 369.4 666 71.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 1.1e-99 368.6 725 65.9
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 3.2e-99 367.1 670 72.8
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 1.2e-98 365.2 725 66.2
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 4.6e-98 363.2 718 67.4
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.8e-97 361.3 660 72.0
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 3.9e-97 360.1 660 71.5
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 3.9e-97 360.1 670 72.4
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 8.7e-97 359.0 725 66.6
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 5.6e-96 356.3 699 69.7
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.8e-95 354.0 519 63.6
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 1.8e-94 351.3 674 70.3
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 5.3e-94 349.7 720 66.8
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 6.9e-94 349.4 691 67.6
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 9.0e-94 349.0 617 72.6
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 9.0e-94 349.0 665 70.4
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.2e-93 348.6 672 70.1
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 1.2e-93 348.6 679 69.7
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 1.3e-92 345.1 712 62.1
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 2.2e-92 344.4 414 73.2
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.1e-91 342.0 625 72.2
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.4e-91 341.7 621 72.5
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.2e-90 338.6 629 71.7
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 4.6e-90 336.7 670 56.1
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.0e-89 335.5 626 68.2
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.0e-89 335.5 629 70.7
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 1.8e-89 334.7 659 68.6
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 3.0e-89 334.0 619 67.9
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 3.0e-89 334.0 641 71.9
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 3.9e-89 333.6 626 67.4
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 3.9e-89 333.6 623 67.6
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 3.9e-89 333.6 707 66.6
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 5.1e-89 333.2 619 67.9
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 1.5e-88 331.6 681 65.2
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 1.5e-88 331.6 607 72.5
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.9e-88 331.3 628 72.9
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 2.5e-88 330.9 590 73.9
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 5.7e-88 329.7 619 67.0
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.5e-85 321.6 664 69.6
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 7.7e-85 319.3 319 52.0
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 1.1e-83 315.5 623 71.7
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 7.2e-83 312.8 625 72.0
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 9.4e-83 312.4 711 65.8
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.7e-82 310.8 362 48.1
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 5.1e-81 306.6 681 66.7
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 2.5e-80 304.3 565 70.6
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 3.3e-80 303.9 718 64.6
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.3e-76 292.0 314 50.3
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 2.2e-76 291.2 503 82.9
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 8.5e-76 289.3 700 65.4
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 1.6e-74 285.0 226 59.3
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 8.8e-73 279.3 271 51.3
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.0e-65 254.2 398 66.1
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 4.5e-61 240.4 492 81.9
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 3.1e-54 217.6 503 76.3
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 1.7e-52 211.8 508 77.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 3.0e-49 201.1 534 68.7
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 2.6e-48 198.0 198 46.5
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.3e-35 154.5 117 61.5
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 1.0e-33 149.4 218 36.2
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.2e-32 146.0 235 85.1
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 1.3e-28 132.5 184 35.9
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 3.0e-28 131.3 85 75.3
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.8e-26 124.8 85 69.4
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 4.0e-25 120.9 199 33.7
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 7.5e-24 116.7 79 75.9
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 1.3e-23 115.9 87 66.7
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 5.4e-22 110.5 69 79.7
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.1e-19 102.8 179 39.1
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.1e-19 102.8 433 79.9
Aa31LG8G12930 Aethionema arabicum HOM05D003056 ORTHO05D003422 2.1e-10 72.0 213 27.2
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.1e-09 68.2 200 28.5
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 5.2e-09 67.4 193 28.0
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 6.8e-09 67.0 57 63.2
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 6.8e-09 67.0 149 27.5
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 6.8e-09 67.0 193 26.9
Cfa004621 Carpinus fangiana HOM05D003056 ORTHO05D003422 8.9e-09 66.6 157 30.6
Haze_10217 Corylus avellana HOM05D001121 ORTHO05D001256 2.6e-08 65.1 157 29.3
FvH4_2g04590 Fragaria vesca HOM05D003056 ORTHO05D003422 7.6e-08 63.5 195 25.6
FAN24G1521 Fragaria x ananassa HOM05D003056 ORTHO05D003422 7.6e-08 63.5 195 25.6
EL10Ac8g19354 Beta vulgaris HOM05D001121 ORTHO05D003422 1.3e-07 62.8 224 27.2
FAN15G3015 Fragaria x ananassa HOM05D003056 ORTHO05D003422 1.3e-07 62.8 121 30.6
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 8.4e-07 60.1 48 56.2
CANSAT25G1867 Cannabis sativa HOM05D003056 ORTHO05D003422 1.4e-06 59.3 186 28.0
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 4.2e-06 57.8 94 39.4
PGSC0003DMG400025851 Solanum tuberosum HOM05D003056 ORTHO05D003422 9.3e-06 56.6 145 29.7


User provided reference genes

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