Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g10610 Coffea canephora HOM05D008192 ORTHO05D010301 3.5e-83 311.6 162 100.0
Dinv08187 Davidia involucrata HOM05D008192 ORTHO05D010301 1.6e-27 126.7 175 46.9
Actinidia10524 Actinidia chinensis HOM05D008192 ORTHO05D010301 3.3e-25 119.0 162 44.4
CSS0005628 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 3.7e-24 115.5 183 43.7
CSS0017566 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 3.7e-24 115.5 183 43.7
Duzib187G1399 Durio zibethinus HOM05D008192 ORTHO05D010301 1.3e-21 107.1 171 43.3
Prupe.1G394700 Prunus persica HOM05D008192 ORTHO05D010301 1.3e-21 107.1 162 40.1
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 1.7e-21 106.7 175 45.7
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 5.0e-21 105.1 166 43.4
Dinv13414 Davidia involucrata HOM05D008192 ORTHO05D010301 1.1e-20 104.0 110 54.5
Ciclev10009717m.g Citrus clementina HOM05D008192 ORTHO05D010301 2.5e-20 102.8 173 41.0
MSTRG.11783 Avicennia marina HOM05D008192 ORTHO05D010301 6.1e-19 98.2 173 41.0
Hma1.2p1_0389F.1_g142520 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 6.1e-19 98.2 174 41.4
Oeu021912.1 Olea europaea HOM05D008192 ORTHO05D010301 2.3e-18 96.3 171 38.6
Thecc.09G015000 Theobroma cacao HOM05D008192 ORTHO05D010301 2.3e-18 96.3 174 42.5
Hma1.2p1_1685F.1_g297470 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 3.0e-18 95.9 174 41.4
Gohir.A05G060200 Gossypium hirsutum HOM05D008192 ORTHO05D010301 5.2e-18 95.1 171 41.5
Gohir.A06G102100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 8.8e-18 94.4 171 39.8
Cfa013043 Carpinus fangiana HOM05D008192 ORTHO05D010301 2.6e-17 92.8 172 40.1
Gorai.009G063500 Gossypium raimondii HOM05D008192 ORTHO05D010301 2.6e-17 92.8 171 40.4
Actinidia22286 Actinidia chinensis HOM05D008192 ORTHO05D010301 4.4e-17 92.0 106 48.1
Haze_21404 Corylus avellana HOM05D008192 ORTHO05D010301 4.4e-17 92.0 173 38.7
Migut.A00360 Erythranthe guttata HOM05D008192 ORTHO05D010301 1.7e-16 90.1 163 36.2
FvH4_2g41181 Fragaria vesca HOM05D008192 ORTHO05D010301 2.8e-16 89.4 166 37.3
FAN15G3555 Fragaria x ananassa HOM05D002088 ORTHO05D002204 6.3e-16 88.2 149 37.6
Nitab4.5_0010499g0010 Nicotiana tabacum HOM05D008192 ORTHO05D010301 1.4e-15 87.0 179 36.9
QL02p018787 Quercus lobata HOM05D008192 ORTHO05D010301 1.4e-15 87.0 173 35.3
FAN20G1545 Fragaria x ananassa HOM05D008192 ORTHO05D010301 1.8e-15 86.7 167 35.3
Cpa.g.sc148.20 Carica papaya HOM05D008192 ORTHO05D010301 5.4e-15 85.1 169 37.3
Gohir.D06G104100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 5.4e-15 85.1 161 39.8
SalBow4G3126 Salvia bowleyana HOM05D008192 ORTHO05D010301 7.0e-15 84.7 164 40.2
Gorai.010G119200 Gossypium raimondii HOM05D008192 ORTHO05D010301 1.2e-14 84.0 163 42.9
RcHm_v2.0_Chr6g0299341 Rosa chinensis HOM05D008192 ORTHO05D010301 2.7e-14 82.8 165 35.8
Peaxi162Scf00045g02027 Petunia axillaris HOM05D008192 ORTHO05D010301 7.7e-14 81.3 110 43.6
AUR62024800 Chenopodium quinoa HOM05D008192 ORTHO05D010301 1.3e-13 80.5 154 36.4
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 1.7e-13 80.1 185 33.5
AUR62032421 Chenopodium quinoa HOM05D008192 ORTHO05D010301 2.9e-13 79.3 154 37.0
Oeu032512.1 Olea europaea HOM05D008192 ORTHO05D010301 2.9e-13 79.3 101 46.5
Duzib150G1248 Durio zibethinus HOM05D008192 ORTHO05D010301 6.5e-13 78.2 170 38.2
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 1.5e-12 77.0 194 32.5
Sopen08g002700 Solanum pennellii HOM05D008192 ORTHO05D010301 1.9e-12 76.6 182 33.5
CAN.G1198.1 Capsicum annuum HOM05D008192 ORTHO05D010301 3.2e-12 75.9 156 35.9
Atru.chr7.2557 Acer truncatum HOM05D008192 ORTHO05D010301 4.2e-12 75.5 162 35.2
MD08G1055700 Malus domestica HOM05D008192 ORTHO05D010301 4.2e-12 75.5 167 34.1
EL10Ac2g02493 Beta vulgaris HOM05D008192 ORTHO05D010301 9.5e-12 74.3 153 32.7
Sabra06G0207000 Salix brachista HOM05D008192 ORTHO05D010301 9.5e-12 74.3 161 34.8
Solyc08g006760.4 Solanum lycopersicum HOM05D008192 ORTHO05D010301 1.2e-11 73.9 177 33.3
Nitab4.5_0000264g0200 Nicotiana tabacum HOM05D008192 ORTHO05D010301 2.7e-11 72.8 110 39.1
SGA_v2.0_scaffold147G36345 Striga asiatica HOM05D008192 ORTHO05D010301 3.6e-11 72.4 162 30.9
Gohir.D05G062401 Gossypium hirsutum HOM05D008192 ORTHO05D010301 4.7e-11 72.0 71 62.0
Manes.03G008000 Manihot esculenta HOM05D008192 ORTHO05D010301 4.7e-11 72.0 143 34.3
FAN27G3331 Fragaria x ananassa HOM05D002088 ORTHO05D002204 1.4e-10 70.5 121 38.8
Glyma.17G223700 Glycine max HOM05D008192 ORTHO05D010301 1.4e-10 70.5 159 34.6
Peaxi162Scf01286g00122 Petunia axillaris HOM05D008192 ORTHO05D010301 1.8e-10 70.1 154 38.3
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 3.0e-10 69.3 181 33.1
Sc09g0010700 Simmondsia chinensis HOM05D008192 ORTHO05D010301 4.0e-10 68.9 150 36.7
CANSAT25G1276 Cannabis sativa HOM05D008192 ORTHO05D010301 6.8e-10 68.2 74 51.4
arahy.Tifrunner.gnm1.ann1.D8U9UB Arachis hypogaea HOM05D008192 ORTHO05D010301 8.8e-10 67.8 162 35.2
MD15G1041800 Malus domestica HOM05D008192 ORTHO05D010301 8.8e-10 67.8 110 38.2
Ah.10g025590 Amaranthus hybridus HOM05D008192 ORTHO05D010301 1.2e-09 67.4 153 30.7
CiPaw.07G230700 Carya illinoinensis HOM05D008192 ORTHO05D010301 1.2e-09 67.4 148 38.5
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 1.2e-09 67.4 180 35.0
Manes.16G130300 Manihot esculenta HOM05D008192 ORTHO05D010301 4.4e-09 65.5 138 35.5
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 5.7e-09 65.1 99 36.4
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 5.7e-09 65.1 99 36.4
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 3.7e-08 62.4 96 36.5
Hund02985 Selenicereus undatus HOM05D008192 ORTHO05D010301 3.7e-08 62.4 177 32.2
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 4.9e-08 62.0 115 33.9
arahy.Tifrunner.gnm1.ann1.XVGB1U Arachis hypogaea HOM05D008192 ORTHO05D010301 8.3e-08 61.2 186 33.3
DCAR_022864 Daucus carota HOM05D008192 ORTHO05D010301 8.3e-08 61.2 112 37.5
Potri.006G264900 Populus trichocarpa HOM05D008192 ORTHO05D010301 8.3e-08 61.2 73 47.9
Sopen06g014330 Solanum pennellii HOM05D000014 ORTHO05D010301 8.3e-08 61.2 144 32.6
PGSC0003DMG400026278 Solanum tuberosum HOM05D008192 ORTHO05D010301 1.8e-07 60.1 112 33.9
Lalb_Chr24g0401951 Lupinus albus HOM05D008192 ORTHO05D010301 4.1e-07 58.9 162 31.5
Sed0007247 Sechium edule HOM05D008192 ORTHO05D010301 7.0e-07 58.2 75 40.0
Hund25618 Selenicereus undatus HOM05D008192 ORTHO05D010301 1.2e-06 57.4 66 48.5
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 2.0e-06 56.6 101 35.6
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 2.0e-06 56.6 95 35.8
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 2.7e-06 56.2 95 35.8
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 3.5e-06 55.8 95 35.8
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 7.7e-06 54.7 92 38.0


User provided reference genes

Program Settings