Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 0.0e+00 1082.4 520 100.0
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.2e-265 919.5 570 78.8
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.4e-263 912.5 572 78.3
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 5.1e-261 904.0 551 79.7
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 5.7e-260 900.6 572 76.6
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 7.4e-260 900.2 568 77.3
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 9.7e-260 899.8 570 77.2
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 1.3e-259 899.4 569 77.3
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 2.2e-259 898.7 572 76.4
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 3.7e-259 897.9 572 76.0
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 1.4e-258 896.0 572 75.9
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.1e-258 894.4 565 76.3
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 4.1e-258 894.4 556 78.4
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 4.1e-258 894.4 569 76.1
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 5.3e-258 894.0 570 76.5
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 9.1e-258 893.3 569 76.6
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.5e-257 892.5 569 75.9
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 3.5e-257 891.3 570 76.7
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.0e-256 889.8 568 76.4
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.7e-256 889.0 569 75.6
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.9e-256 888.3 565 75.8
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 2.9e-256 888.3 569 76.8
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 2.9e-256 888.3 569 75.6
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.9e-256 888.3 572 75.7
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-255 886.3 565 75.8
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.4e-255 885.9 565 75.8
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.9e-255 885.6 592 74.0
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.2e-255 884.8 569 75.9
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 3.2e-255 884.8 570 75.3
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 4.2e-255 884.4 551 77.9
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 5.5e-255 884.0 551 77.9
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 5.5e-255 884.0 569 75.2
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 7.2e-255 883.6 550 78.0
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 7.2e-255 883.6 568 74.5
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-254 882.9 565 75.6
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.6e-254 882.5 569 75.2
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.6e-254 882.5 570 75.1
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.6e-254 881.3 570 75.1
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.1e-254 880.6 570 75.1
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 6.1e-254 880.6 569 75.2
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 8.0e-254 880.2 550 77.1
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 8.0e-254 880.2 568 74.5
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 2.3e-253 878.6 569 75.0
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 2.3e-253 878.6 600 72.3
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 2.3e-253 878.6 568 74.5
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 3.0e-253 878.2 574 74.7
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 3.9e-253 877.9 574 75.3
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 5.2e-253 877.5 569 75.0
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 5.2e-253 877.5 567 75.3
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.7e-253 877.1 565 75.9
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 2.6e-252 875.2 549 77.2
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 3.3e-252 874.8 568 73.9
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.7e-251 872.5 571 74.3
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 8.2e-251 870.2 571 74.8
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 8.2e-251 870.2 570 74.7
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.1e-250 869.8 548 76.3
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.4e-250 869.4 552 76.1
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 1.8e-250 869.0 549 75.8
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 3.1e-250 868.2 574 73.7
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 9.1e-250 866.7 549 75.4
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 5.9e-249 864.0 542 76.8
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 8.5e-248 860.1 549 75.2
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.5e-247 859.4 550 75.3
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.5e-247 859.4 509 81.1
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.9e-247 859.0 549 75.2
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 2.5e-247 858.6 549 74.9
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 4.2e-247 857.8 549 74.9
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.2e-246 856.3 551 74.2
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.6e-246 855.9 569 73.6
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 8.0e-246 853.6 549 74.5
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.4e-245 852.8 551 74.0
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 3.0e-245 851.7 549 74.7
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 3.0e-245 851.7 549 74.1
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.5e-244 849.4 566 73.3
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 2.6e-244 848.6 543 75.1
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 3.4e-244 848.2 570 73.3
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 5.7e-244 847.4 568 72.9
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 5.7e-244 847.4 570 73.2
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 1.3e-243 846.3 551 73.7
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.3e-243 846.3 542 75.5
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 2.8e-243 845.1 549 73.8
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.4e-242 842.8 542 74.2
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.2e-241 839.7 550 73.8
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 2.7e-241 838.6 460 85.7
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 4.5e-241 837.8 541 74.3
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 5.9e-241 837.4 557 73.1
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.7e-240 835.9 562 70.8
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 6.5e-240 833.9 541 73.6
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.5e-239 832.0 549 73.4
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.5e-239 832.0 569 70.1
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 2.1e-238 828.9 572 71.7
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.7e-238 828.6 569 69.6
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.2e-236 823.2 553 73.4
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 2.2e-235 818.9 520 76.5
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.7e-235 818.1 566 71.0
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.0e-229 798.5 574 69.2
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 6.8e-229 797.3 571 70.9
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.8e-227 792.0 568 70.8
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.0e-224 783.5 440 83.4
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.6e-224 780.8 541 69.7
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 1.1e-223 780.0 545 67.3
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.1e-223 780.0 541 69.5
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.5e-223 779.6 549 69.4
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 9.5e-223 776.9 546 69.6
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 2.3e-221 772.3 561 68.3
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.9e-221 770.4 564 68.1
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 7.0e-218 760.8 552 68.5
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 4.9e-211 738.0 548 66.2
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 6.6e-208 727.6 563 67.7
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.2e-204 716.8 455 76.9
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 9.9e-204 713.8 506 70.4
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 7.3e-199 697.6 569 63.6
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 6.8e-197 691.0 541 61.7
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 8.9e-197 690.6 549 62.8
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 4.2e-194 681.8 552 61.1
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.2e-186 655.6 543 60.2
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 2.7e-185 652.5 424 75.7
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 6.0e-185 651.4 423 75.2
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.7e-184 649.8 527 62.4
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.7e-184 649.8 527 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 5.1e-184 648.3 548 58.9
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 4.3e-183 645.2 547 59.0
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 1.0e-168 597.4 606 55.4
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.7e-153 546.2 535 57.2
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.3e-134 484.2 330 73.0
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 9.1e-133 478.0 334 70.4
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.5e-130 470.7 543 47.0
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.8e-126 456.4 318 68.6
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 5.9e-124 448.7 339 67.0
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-114 416.8 292 71.2
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 7.3e-106 388.7 309 64.7
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.8e-97 360.1 199 85.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.8e-73 280.4 454 41.2
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.1e-69 268.5 336 43.8
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 6.0e-68 262.7 195 64.6
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 3.0e-59 233.8 139 81.3
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-50 204.1 127 74.0
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.3e-46 191.8 109 76.1
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 5.0e-46 189.9 126 69.0
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.6e-44 183.7 119 73.9
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 2.9e-38 164.1 95 76.8
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 9.7e-34 149.1 76 86.8
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.7e-25 121.7 133 51.1
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 3.7e-25 120.6 118 48.3
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.8e-25 120.2 86 69.8
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 3.1e-24 117.5 189 41.3
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.1e-21 109.0 60 80.0
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 1.6e-20 105.1 68 69.1
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 1.8e-19 101.7 129 44.2
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 3.0e-19 100.9 137 41.6
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-16 92.4 127 40.9
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-16 92.4 127 40.9
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 4.5e-15 87.0 58 69.0
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 4.5e-15 87.0 58 69.0
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 5.9e-15 86.7 58 67.2
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 5.9e-15 86.7 58 67.2
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 5.0e-14 83.6 60 66.7
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.0e-06 59.3 36 72.2


User provided reference genes

Program Settings