Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 2.3e-196 688.7 347 100.0
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 3.3e-163 578.6 347 83.3
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.3e-163 578.2 347 83.3
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.3e-163 578.2 347 83.3
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 3.1e-161 572.0 347 83.0
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 7.6e-160 567.4 347 81.3
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 9.9e-160 567.0 348 81.9
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 9.9e-160 567.0 347 81.6
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 3.8e-159 565.1 348 82.5
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 1.1e-158 563.5 349 80.5
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 1.9e-158 562.8 348 82.2
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.9e-158 562.8 347 83.0
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.9e-158 562.8 347 81.3
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 2.5e-158 562.4 349 80.2
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 3.2e-158 562.0 347 81.0
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 4.2e-158 561.6 349 81.1
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 9.3e-158 560.5 347 81.3
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 9.3e-158 560.5 347 81.6
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 3.5e-157 558.5 360 79.2
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 3.5e-157 558.5 347 81.3
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 3.5e-157 558.5 323 85.4
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 1.0e-156 557.0 347 81.3
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.0e-156 557.0 347 80.7
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.0e-156 557.0 347 80.4
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.8e-156 556.2 347 80.4
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 2.3e-156 555.8 347 80.4
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 3.0e-156 555.4 347 80.4
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 8.7e-156 553.9 347 80.7
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 1.1e-155 553.5 347 81.3
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 7.4e-155 550.8 347 79.8
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 2.1e-154 549.3 347 79.0
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 3.7e-154 548.5 324 82.7
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 3.7e-154 548.5 324 84.9
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 3.7e-154 548.5 348 79.9
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 3.7e-154 548.5 347 79.0
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 4.8e-154 548.1 347 80.4
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 8.2e-154 547.4 347 80.4
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 1.4e-153 546.6 354 79.1
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.4e-153 546.6 347 79.3
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 1.4e-153 546.6 357 78.2
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.8e-153 546.2 335 81.8
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 4.0e-153 545.0 340 80.9
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 4.0e-153 545.0 348 79.3
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 4.0e-153 545.0 347 79.3
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 6.9e-153 544.3 348 79.6
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 9.0e-153 543.9 345 80.6
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 9.0e-153 543.9 348 79.0
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.5e-152 543.1 345 80.6
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 3.4e-152 542.0 347 78.4
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 7.6e-152 540.8 347 78.4
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 1.3e-151 540.0 354 78.0
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 2.2e-151 539.3 353 76.5
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 2.2e-151 539.3 353 76.8
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 2.9e-151 538.9 353 77.6
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 2.9e-151 538.9 351 78.9
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 4.9e-151 538.1 353 76.2
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 6.5e-151 537.7 347 77.8
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 8.4e-151 537.3 350 77.7
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 8.4e-151 537.3 322 82.3
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.4e-150 536.6 347 77.8
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.5e-150 535.8 347 77.8
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 3.2e-150 535.4 348 77.6
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 4.2e-150 535.0 347 76.9
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 4.2e-150 535.0 323 81.7
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 9.3e-150 533.9 347 78.7
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 9.3e-150 533.9 347 79.0
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.2e-149 533.5 347 77.8
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 1.6e-149 533.1 349 77.7
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 4.6e-149 531.6 347 78.1
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 6.0e-149 531.2 319 83.1
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.8e-148 529.6 348 77.3
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 3.9e-148 528.5 353 74.2
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 6.7e-148 527.7 338 78.1
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 6.7e-148 527.7 353 75.9
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 8.7e-148 527.3 347 76.7
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 8.7e-148 527.3 347 76.7
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 8.7e-148 527.3 347 76.7
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 8.7e-148 527.3 353 73.9
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 3.3e-147 525.4 349 76.5
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 4.3e-147 525.0 347 76.1
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 5.7e-147 524.6 347 76.7
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 5.7e-147 524.6 347 76.7
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 7.4e-147 524.2 323 80.8
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 1.3e-146 523.5 355 75.2
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 1.3e-146 523.5 353 73.7
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 2.2e-146 522.7 347 76.7
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 2.2e-146 522.7 349 76.2
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 2.2e-146 522.7 349 76.2
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 2.2e-146 522.7 359 75.8
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 3.7e-146 521.9 355 75.2
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 3.7e-146 521.9 337 78.3
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 4.8e-146 521.5 375 72.5
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 6.3e-146 521.2 355 75.2
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 1.4e-145 520.0 349 75.9
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.8e-145 519.6 363 74.1
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.4e-145 519.2 347 78.1
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 9.0e-145 517.3 355 75.2
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 3.4e-144 515.4 347 75.5
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 4.5e-144 515.0 363 74.4
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 5.9e-144 514.6 347 76.1
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 7.7e-144 514.2 356 73.9
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 1.7e-143 513.1 347 75.2
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 2.2e-143 512.7 347 75.2
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 3.2e-142 508.8 347 74.6
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 7.2e-142 507.7 347 74.1
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 3.6e-141 505.4 347 73.8
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 4.6e-141 505.0 347 74.4
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 3.0e-140 502.3 368 71.2
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.5e-139 499.2 327 78.9
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 2.5e-139 499.2 347 72.9
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 3.8e-135 485.3 346 73.1
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 1.2e-133 480.3 349 72.5
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.6e-133 479.9 312 76.3
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 2.1e-133 479.6 327 72.8
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 2.3e-132 476.1 388 66.2
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 5.1e-132 474.9 347 70.6
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 5.1e-132 474.9 347 70.6
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 7.4e-131 471.1 323 74.6
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.8e-130 469.2 295 81.0
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.8e-130 469.2 295 81.0
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.8e-130 468.4 328 75.6
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 4.1e-129 465.3 348 68.4
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 7.0e-129 464.5 347 70.3
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 2.0e-128 463.0 347 69.7
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 1.9e-126 456.4 351 65.2
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 5.5e-126 454.9 348 67.0
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 2.7e-125 452.6 351 65.0
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 3.6e-125 452.2 323 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.4e-124 450.3 324 69.8
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 3.0e-124 449.1 330 70.3
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 3.0e-124 449.1 354 64.1
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 8.8e-124 447.6 324 69.1
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 4.0e-116 422.2 277 75.5
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 8.8e-116 421.0 315 66.7
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.0e-112 409.8 332 62.7
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.7e-112 409.5 318 64.2
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 1.0e-108 397.5 323 61.9
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 5.2e-108 395.2 231 83.5
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 4.0e-100 369.0 255 71.4
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.1e-97 360.9 228 78.1
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 6.1e-93 345.1 201 85.1
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.1e-84 316.2 298 57.0
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 7.1e-81 305.1 248 64.1
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 6.0e-80 302.0 220 70.0
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 2.5e-70 270.0 185 76.2
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.3e-66 257.7 186 67.7
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.3e-66 257.7 186 67.7
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.4e-57 226.9 165 67.3
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 5.4e-57 225.7 131 84.7
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 7.9e-56 221.9 123 87.0
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 7.3e-54 215.3 119 84.9
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.4e-52 211.1 122 80.3
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 2.1e-45 187.2 164 62.8
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 2.0e-43 180.6 164 61.6
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 7.1e-41 172.2 164 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.3e-39 167.2 129 65.1
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 3.9e-31 139.8 118 66.1
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 6.3e-29 132.5 92 73.9
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 7.7e-27 125.6 172 44.8
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 6.5e-26 122.5 70 85.7
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.8e-23 114.4 92 65.2
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 9.1e-20 102.1 78 65.4
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 2.2e-18 97.4 71 66.2
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.6e-16 91.3 118 47.5
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 2.7e-16 90.5 78 59.0
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.2e-13 80.9 145 40.7
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 8.5e-10 68.9 51 68.6
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 2.1e-08 64.3 42 78.6
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 3.0e-07 60.5 36 75.0


User provided reference genes

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