Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g09650 Coffea canephora HOM05D000173 ORTHO05D004400 1.2e-42 176.0 87 100.0
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.6e-26 122.5 65 93.8
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 6.2e-26 120.6 65 89.2
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 8.1e-26 120.2 65 89.2
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 1.1e-25 119.8 65 89.2
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 1.1e-25 119.8 65 87.7
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 1.4e-25 119.4 65 89.2
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 1.8e-25 119.0 65 89.2
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 1.8e-25 119.0 65 89.2
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 2.3e-25 118.6 65 87.7
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 3.1e-25 118.2 65 86.2
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 3.1e-25 118.2 65 86.2
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 3.1e-25 118.2 65 86.2
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 3.1e-25 118.2 65 86.2
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 3.1e-25 118.2 65 86.2
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 3.1e-25 118.2 65 86.2
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 3.1e-25 118.2 65 87.7
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 3.1e-25 118.2 65 87.7
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 4.0e-25 117.9 65 87.7
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 5.2e-25 117.5 65 86.2
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 5.2e-25 117.5 65 86.2
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 6.8e-25 117.1 65 86.2
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 6.8e-25 117.1 65 87.7
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 8.9e-25 116.7 65 87.7
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 8.9e-25 116.7 65 86.2
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 8.9e-25 116.7 64 89.1
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 8.9e-25 116.7 65 86.2
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 8.9e-25 116.7 65 86.2
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 1.2e-24 116.3 65 84.6
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 1.2e-24 116.3 65 86.2
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 1.5e-24 115.9 66 84.8
Haze_04564 Corylus avellana HOM05D000173 ORTHO05D004400 1.5e-24 115.9 65 84.6
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 1.5e-24 115.9 65 84.6
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 2.0e-24 115.5 66 84.8
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 2.0e-24 115.5 65 84.6
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 2.0e-24 115.5 66 84.8
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 2.0e-24 115.5 66 83.3
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 2.6e-24 115.2 65 86.2
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 2.6e-24 115.2 65 83.1
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 2.6e-24 115.2 65 83.1
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 2.6e-24 115.2 65 84.6
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 2.6e-24 115.2 65 84.6
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 2.6e-24 115.2 65 83.1
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 2.6e-24 115.2 65 84.6
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 3.4e-24 114.8 65 83.1
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 4.4e-24 114.4 65 83.1
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 4.4e-24 114.4 65 81.5
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 4.4e-24 114.4 65 84.6
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 5.8e-24 114.0 65 83.1
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 5.8e-24 114.0 65 83.1
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 7.5e-24 113.6 66 83.3
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 7.5e-24 113.6 66 83.3
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 9.9e-24 113.2 65 84.6
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 9.9e-24 113.2 65 83.1
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 9.9e-24 113.2 65 84.6
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 9.9e-24 113.2 65 84.6
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 9.9e-24 113.2 65 87.7
Sabra15G0073100 Salix brachista HOM05D000173 ORTHO05D004400 9.9e-24 113.2 65 83.1
Sabra15G0075200 Salix brachista HOM05D000173 ORTHO05D004400 9.9e-24 113.2 65 83.1
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 1.3e-23 112.8 66 80.3
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 1.3e-23 112.8 65 81.5
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 1.3e-23 112.8 65 81.5
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 1.7e-23 112.5 64 82.8
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 2.2e-23 112.1 65 83.1
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 2.2e-23 112.1 65 83.1
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 2.2e-23 112.1 70 81.4
Aqoxy2G03970 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 2.9e-23 111.7 66 83.3
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 3.7e-23 111.3 65 83.1
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 4.9e-23 110.9 65 81.5
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 4.9e-23 110.9 65 80.0
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 4.9e-23 110.9 65 80.0
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 6.4e-23 110.5 65 76.9
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 6.4e-23 110.5 65 78.5
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 6.4e-23 110.5 64 81.2
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 8.3e-23 110.2 65 75.4
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 8.3e-23 110.2 65 83.1
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 8.3e-23 110.2 66 80.3
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 8.3e-23 110.2 66 78.8
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 1.1e-22 109.8 65 76.9
Ciclev10020836m.g Citrus clementina HOM05D000173 ORTHO05D004400 1.1e-22 109.8 64 84.4
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 1.1e-22 109.8 65 78.5
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 1.4e-22 109.4 64 78.1
CDE04G0761 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 1.9e-22 109.0 65 81.5
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 2.4e-22 108.6 65 80.0
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 2.4e-22 108.6 64 79.7
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 3.2e-22 108.2 65 75.4
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 4.1e-22 107.8 65 75.4
FvH4_6g50670 Fragaria vesca HOM05D000173 ORTHO05D004400 4.1e-22 107.8 65 78.5
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 4.1e-22 107.8 65 75.4
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 7.1e-22 107.1 66 78.8
arahy.Tifrunner.gnm1.ann1.DFGQ2J Arachis hypogaea HOM05D000173 ORTHO05D004400 7.1e-22 107.1 64 79.7
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 7.1e-22 107.1 64 79.7
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 7.1e-22 107.1 65 73.8
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 7.1e-22 107.1 65 73.8
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 7.1e-22 107.1 65 72.3
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 9.2e-22 106.7 64 75.0
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 9.2e-22 106.7 65 73.8
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 9.2e-22 106.7 65 76.9
FAN14G3847 Fragaria x ananassa HOM05D000173 ORTHO05D004400 9.2e-22 106.7 65 76.9
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 9.2e-22 106.7 65 78.5
Medtr8g007440 Medicago truncatula HOM05D000173 ORTHO05D004400 9.2e-22 106.7 66 81.8
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 1.2e-21 106.3 66 78.8
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 1.2e-21 106.3 66 78.8
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 2.1e-21 105.5 65 72.3
A06p14500 Brassica napus HOM05D000173 ORTHO05D004400 2.1e-21 105.5 65 72.3
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 2.1e-21 105.5 65 72.3
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 2.1e-21 105.5 65 72.3
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 2.1e-21 105.5 65 76.9
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 2.1e-21 105.5 79 70.9
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 2.1e-21 105.5 65 73.8
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 2.7e-21 105.1 65 73.8
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 3.5e-21 104.8 63 79.4
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 3.5e-21 104.8 65 72.3
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 4.6e-21 104.4 65 73.8
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 4.6e-21 104.4 65 73.8
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 4.6e-21 104.4 65 72.3
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 7.8e-21 103.6 66 75.8
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 1.3e-20 102.8 66 71.2
C05p16720 Brassica napus HOM05D000173 ORTHO05D004400 2.3e-20 102.1 65 70.8
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 3.0e-20 101.7 65 78.5
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 3.0e-20 101.7 65 75.4
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 5.1e-20 100.9 65 78.5
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 6.6e-20 100.5 64 75.0
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 6.6e-20 100.5 65 75.4
VMungo0698G0001 Vigna mungo HOM05D000173 ORTHO05D004400 8.6e-20 100.1 64 73.4
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 2.5e-19 98.6 66 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 2.1e-18 95.5 65 76.9
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 6.2e-18 94.0 65 67.7
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.8e-17 92.4 65 70.8
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 3.1e-17 91.7 66 65.2
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 4.0e-17 91.3 64 67.2
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 5.2e-17 90.9 64 65.6
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 2.4e-14 82.0 50 76.0
Ca_31177_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.2e-13 79.7 43 86.0
FAN14G1259 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.2e-13 79.7 50 76.0
SHI30368 Sapria himalayana HOM05D000105 ORTHO05D000023 7.8e-13 77.0 44 79.5
AUR62025878 Chenopodium quinoa HOM05D000173 ORTHO05D004400 1.7e-12 75.9 44 77.3
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 1.7e-12 75.9 44 77.3
Duzib093G1455 Durio zibethinus HOM05D000173 ORTHO05D004400 2.3e-12 75.5 57 63.2
CAN.G77.14 Capsicum annuum HOM05D000173 ORTHO05D004400 3.9e-12 74.7 42 81.0
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 8.7e-12 73.6 54 64.8
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 4.3e-11 71.2 43 74.4
FAN02G0305 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.6e-10 69.3 49 69.4
SGA_v2.0_scaffold192G40619 Striga asiatica HOM05D000173 ORTHO05D004400 6.2e-10 67.4 45 73.3
VMungo0251G1487 Vigna mungo HOM05D000173 ORTHO05D004400 2.4e-09 65.5 64 54.7
ATR0737G099 Amborella trichopoda HOM05D000173 ORTHO05D004400 1.5e-08 62.8 42 73.8
Carub.0004s2443 Capsella rubella HOM05D000173 ORTHO05D000316 5.4e-06 54.3 65 40.0
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 5.4e-06 54.3 65 40.0
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 7.1e-06 53.9 65 40.0
Peaxi162Scf00171g00347 Petunia axillaris HOM05D000173 ORTHO05D000316 7.1e-06 53.9 65 44.6
Peaxi162Scf00171g00348 Petunia axillaris HOM05D000173 ORTHO05D000010 7.1e-06 53.9 65 44.6
Peaxi162Scf59397g00001 Petunia axillaris HOM05D000173 ORTHO05D000316 7.1e-06 53.9 65 44.6
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 7.1e-06 53.9 77 39.0
Peaxi162Scf00765g00002 Petunia axillaris HOM05D000173 ORTHO05D000316 9.3e-06 53.5 65 41.5


User provided reference genes

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