Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 1.1e-228 796.2 374 100.0
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 3.2e-196 688.3 372 84.4
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 3.0e-194 681.8 374 83.4
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 6.7e-194 680.6 372 83.9
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 1.5e-193 679.5 375 81.9
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 7.4e-193 677.2 374 82.9
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 6.9e-191 670.6 370 83.5
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.5e-190 669.5 375 81.3
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 2.6e-190 668.7 375 81.9
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 6.4e-189 664.1 375 80.8
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 3.2e-188 661.8 372 81.5
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 4.2e-188 661.4 371 80.6
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 5.5e-188 661.0 374 79.4
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 9.3e-188 660.2 374 79.9
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.2e-187 659.8 373 81.5
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 2.1e-187 659.1 375 80.3
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 6.0e-187 657.5 376 79.5
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.0e-186 656.8 367 80.9
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.0e-186 656.8 374 81.0
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 3.9e-186 654.8 374 80.2
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 5.1e-186 654.4 375 80.8
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 6.7e-186 654.1 371 79.8
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 6.7e-186 654.1 373 81.0
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 8.7e-186 653.7 373 81.0
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 1.1e-185 653.3 372 79.0
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 1.9e-185 652.5 372 78.8
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 3.3e-185 651.7 374 78.9
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.3e-185 651.4 367 80.7
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 7.4e-185 650.6 375 78.9
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 7.4e-185 650.6 385 78.7
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.6e-184 649.4 372 78.8
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.6e-184 649.4 368 80.2
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.8e-184 648.7 372 78.8
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 4.8e-184 647.9 373 79.1
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 6.2e-184 647.5 372 79.3
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.1e-183 646.7 372 79.0
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.1e-183 646.7 372 80.1
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.4e-183 646.4 382 78.0
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.8e-183 646.0 375 79.5
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.8e-183 646.0 376 80.3
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 3.1e-183 645.2 374 78.6
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 4.0e-183 644.8 371 79.0
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 5.3e-183 644.4 372 78.2
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 6.9e-183 644.0 374 79.7
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 9.0e-183 643.7 374 77.5
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.2e-182 643.3 372 79.0
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 1.5e-182 642.9 374 79.1
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 2.0e-182 642.5 376 79.3
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 4.5e-182 641.3 374 79.1
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.0e-181 640.2 371 78.4
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.0e-181 640.2 390 76.7
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.3e-181 639.8 374 78.1
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 2.2e-181 639.0 375 76.8
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 6.5e-181 637.5 369 78.0
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 8.4e-181 637.1 374 78.1
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.1e-180 636.7 372 78.5
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.1e-180 636.7 372 78.0
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 3.2e-180 635.2 375 78.7
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 7.1e-180 634.0 372 76.3
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 9.3e-180 633.6 379 77.0
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.2e-179 633.3 372 77.2
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 3.5e-179 631.7 373 77.7
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 6.0e-179 630.9 373 76.1
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 7.9e-179 630.6 373 77.5
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.0e-178 630.2 372 77.7
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 1.3e-178 629.8 369 77.8
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.3e-178 629.8 373 76.9
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.3e-178 629.0 372 77.4
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 2.3e-178 629.0 373 76.7
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 2.3e-178 629.0 372 76.9
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 6.7e-178 627.5 371 76.8
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 5.7e-177 624.4 357 79.8
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 2.4e-175 619.0 386 74.9
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 6.9e-175 617.5 373 73.7
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 4.5e-174 614.8 371 76.5
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 4.5e-174 614.8 372 75.5
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.7e-173 612.8 368 75.3
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 8.5e-173 610.5 371 74.1
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.9e-172 609.4 373 73.5
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.5e-172 609.0 347 80.4
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 3.2e-172 608.6 373 74.3
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 3.6e-171 605.1 427 68.9
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 3.6e-171 605.1 370 74.1
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 1.8e-170 602.8 372 74.2
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 2.3e-170 602.4 459 64.5
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 3.0e-170 602.1 374 72.5
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 6.7e-170 600.9 372 76.3
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 1.1e-169 600.1 372 73.7
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 1.5e-169 599.7 372 74.2
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.9e-169 599.4 371 73.6
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 2.5e-169 599.0 369 73.4
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 2.5e-169 599.0 372 72.8
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 3.3e-169 598.6 369 74.0
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 4.3e-169 598.2 369 73.7
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 2.2e-168 595.9 370 73.2
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 2.8e-168 595.5 369 73.4
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.1e-167 593.6 374 73.5
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.8e-167 592.8 374 72.5
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 4.1e-167 591.7 403 68.0
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 9.1e-167 590.5 370 72.7
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 6.5e-165 584.3 408 69.6
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 5.5e-164 581.3 374 72.7
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 5.1e-162 574.7 328 79.0
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.1e-161 573.5 374 69.5
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.7e-160 569.7 371 70.9
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 1.7e-160 569.7 403 66.5
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 4.1e-159 565.1 372 71.2
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 4.5e-158 561.6 375 68.8
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 2.1e-155 552.7 370 67.8
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.7e-152 543.1 372 66.4
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 2.8e-152 542.3 361 68.1
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 3.7e-152 542.0 307 80.8
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 8.2e-152 540.8 373 68.6
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.3e-149 533.5 366 67.2
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.7e-149 533.1 373 64.3
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 5.5e-148 528.1 373 64.6
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.7e-144 516.5 411 61.8
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 8.8e-138 494.2 293 76.1
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.5e-137 493.4 371 64.4
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 5.0e-133 478.4 385 60.5
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 8.9e-122 441.0 277 73.6
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 2.6e-113 412.9 343 61.5
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 5.8e-113 411.8 385 53.8
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.1e-102 376.7 217 79.3
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 5.8e-97 358.6 382 47.9
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.2e-96 356.7 229 70.7
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.9e-96 356.3 250 68.4
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.5e-92 343.2 221 71.9
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 2.4e-90 336.7 381 46.5
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 5.3e-90 335.5 372 48.1
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 8.7e-85 318.2 396 43.7
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.8e-80 302.8 204 69.1
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.1e-77 292.4 165 77.6
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 1.4e-74 284.3 170 74.1
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 9.3e-63 245.0 171 68.4
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 5.0e-48 196.1 477 29.1
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 4.4e-44 183.0 94 85.1
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.8e-37 161.0 129 68.2
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 4.8e-35 152.9 105 65.7
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 2.4e-34 150.6 96 69.8
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 1.6e-33 147.9 78 85.9
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 1.8e-26 124.4 92 62.0
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 4.1e-26 123.2 339 28.0
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.3e-19 101.7 163 38.7
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 1.3e-16 91.7 157 37.6
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 6.6e-16 89.4 47 87.2
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 1.6e-14 84.7 43 88.4
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 3.6e-14 83.6 41 90.2
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 3.0e-13 80.5 46 78.3
Cpa.g.c47417 Carica papaya HOM05D004692 ORTHO05D117256 5.6e-07 59.7 29 89.7
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 5.6e-07 59.7 30 70.0


User provided reference genes

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