Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06480 Coffea canephora HOM05D003894 ORTHO05D004584 8.4e-111 403.7 200 100.0
Cc00_g07750 Coffea canephora HOM05D003894 ORTHO05D004584 3.2e-70 268.9 200 70.0
Cc08_g12260 Coffea canephora HOM05D003894 ORTHO05D004584 3.5e-40 169.1 265 44.2
SalBow6G6274 Salvia bowleyana HOM05D003894 ORTHO05D004584 2.1e-37 159.8 261 41.0
Cpa.g.sc29.176 Carica papaya HOM05D003894 ORTHO05D004584 2.3e-36 156.4 241 42.3
Duzib084G0486 Durio zibethinus HOM05D003894 ORTHO05D004584 4.0e-36 155.6 226 46.5
SGA_v2.0_scaffold104G30167 Striga asiatica HOM05D003894 ORTHO05D004584 6.8e-36 154.8 246 42.7
TWI81G0562 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 6.8e-36 154.8 244 43.4
CANSAT21G2005 Cannabis sativa HOM05D003894 ORTHO05D004584 1.5e-35 153.7 241 44.4
CsaV3_3G002580 Cucumis sativus L. HOM05D003894 ORTHO05D004584 1.5e-35 153.7 241 44.4
CiPaw.12G051400 Carya illinoinensis HOM05D003894 ORTHO05D004584 2.0e-35 153.3 241 42.3
Oeu064622.1 Olea europaea HOM05D003894 ORTHO05D004584 2.0e-35 153.3 241 44.0
Dinv39159 Davidia involucrata HOM05D003894 ORTHO05D004584 2.6e-35 152.9 242 42.1
Thecc.03G249300 Theobroma cacao HOM05D003894 ORTHO05D004584 2.6e-35 152.9 238 43.3
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 2.6e-35 152.9 241 43.6
Actinidia14416 Actinidia chinensis HOM05D003894 ORTHO05D004584 3.4e-35 152.5 241 45.2
CSS0035779 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 3.4e-35 152.5 245 42.0
COL.COLO4_37151 Corchorus olitorius HOM05D003894 ORTHO05D004584 3.4e-35 152.5 238 43.3
Migut.A01116 Erythranthe guttata HOM05D003894 ORTHO05D004584 3.4e-35 152.5 241 42.7
CSS0010253 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 4.4e-35 152.1 241 42.7
MELO3C013927.2 Cucumis melo HOM05D003894 ORTHO05D004584 4.4e-35 152.1 241 44.8
Duzib205G0957 Durio zibethinus HOM05D003894 ORTHO05D004584 4.4e-35 152.1 238 43.3
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 4.4e-35 152.1 238 44.1
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 5.8e-35 151.8 243 42.4
TWI60G0612 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 5.8e-35 151.8 242 43.0
Sed0006464 Sechium edule HOM05D003894 ORTHO05D004584 7.5e-35 151.4 242 43.4
CSS0041030 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 1.3e-34 150.6 241 41.9
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 1.3e-34 150.6 240 42.5
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 1.3e-34 150.6 242 41.7
Gorai.004G197200 Gossypium raimondii HOM05D003894 ORTHO05D004584 1.7e-34 150.2 236 43.6
Rhsim11G0023700 Rhododendron simsii HOM05D003894 ORTHO05D004584 2.9e-34 149.4 241 42.3
Hund14570 Selenicereus undatus HOM05D003894 ORTHO05D004584 3.7e-34 149.1 242 42.6
CiPaw.11G080600 Carya illinoinensis HOM05D003894 ORTHO05D004584 6.4e-34 148.3 241 40.7
Nitab4.5_0000618g0110 Nicotiana tabacum HOM05D003894 ORTHO05D004584 8.3e-34 147.9 236 43.2
MSTRG.12111 Avicennia marina HOM05D003894 ORTHO05D004584 1.1e-33 147.5 242 40.5
SGA_v2.0_scaffold199G41177 Striga asiatica HOM05D003894 ORTHO05D004584 1.1e-33 147.5 238 42.9
TPR.G23384 Trifolium pratense HOM05D003894 ORTHO05D004584 1.1e-33 147.5 232 43.1
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 1.4e-33 147.1 270 40.4
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 1.8e-33 146.7 238 42.9
Lj4g0028027 Lotus japonicus HOM05D003894 ORTHO05D004584 1.8e-33 146.7 232 42.2
QL12p011698 Quercus lobata HOM05D003894 ORTHO05D004584 2.4e-33 146.4 241 41.5
Manes.01G081900 Manihot esculenta HOM05D003894 ORTHO05D004584 3.2e-33 146.0 239 41.8
Ca_06903_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 4.1e-33 145.6 232 43.1
vmacro00193 Vaccinium macrocarpon HOM05D003894 ORTHO05D004584 4.1e-33 145.6 253 38.7
Hma1.2p1_0316F.1_g122980 Hydrangea macrophylla HOM05D003894 ORTHO05D004584 5.4e-33 145.2 242 42.1
Medtr7g016670 Medicago truncatula HOM05D003894 ORTHO05D004584 5.4e-33 145.2 232 41.8
Lalb_Chr16g0386751 Lupinus albus HOM05D003894 ORTHO05D004584 9.2e-33 144.4 241 41.9
BcaC06g31388 Brassica carinata HOM05D003894 ORTHO05D004584 2.0e-32 143.3 241 43.2
C07p31050 Brassica napus HOM05D003894 ORTHO05D004584 2.0e-32 143.3 253 40.3
CAN.G62.34 Capsicum annuum HOM05D003894 ORTHO05D004584 2.0e-32 143.3 240 40.0
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 2.7e-32 142.9 246 41.1
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 2.7e-32 142.9 240 41.2
arahy.Tifrunner.gnm1.ann1.0BBG36 Arachis hypogaea HOM05D003894 ORTHO05D004584 3.5e-32 142.5 241 41.5
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 3.5e-32 142.5 241 41.9
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 3.5e-32 142.5 241 41.9
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 3.5e-32 142.5 241 41.5
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 4.6e-32 142.1 246 40.7
Carub.0008s0035 Capsella rubella HOM05D003894 ORTHO05D004584 4.6e-32 142.1 241 43.2
PGSC0003DMG401011882 Solanum tuberosum HOM05D003894 ORTHO05D004584 4.6e-32 142.1 240 40.4
VMungo0251G1668 Vigna mungo HOM05D003894 ORTHO05D004584 4.6e-32 142.1 241 41.5
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 6.0e-32 141.7 246 40.7
Phvul.003G221600 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 6.0e-32 141.7 248 40.3
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 6.0e-32 141.7 240 41.2
arahy.Tifrunner.gnm1.ann1.HK0HI4 Arachis hypogaea HOM05D003894 ORTHO05D004584 7.8e-32 141.4 241 41.1
Glyma.17G142800 Glycine max HOM05D003894 ORTHO05D004584 7.8e-32 141.4 241 41.1
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 7.8e-32 141.4 241 40.7
Solyc06g060770.3 Solanum lycopersicum HOM05D003894 ORTHO05D004584 7.8e-32 141.4 240 40.4
Sopen06g020890 Solanum pennellii HOM05D003894 ORTHO05D004584 7.8e-32 141.4 240 40.4
AT5G47435 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 1.0e-31 141.0 243 41.6
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 1.0e-31 141.0 241 41.9
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 1.3e-31 140.6 242 41.7
AL8G10600 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 1.7e-31 140.2 243 41.6
EL10Ac5g12379 Beta vulgaris HOM05D003894 ORTHO05D004584 1.7e-31 140.2 229 41.0
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 1.7e-31 140.2 246 40.7
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 1.7e-31 140.2 246 40.7
Nn6g33915 Nelumbo nucifera HOM05D003894 ORTHO05D004584 1.7e-31 140.2 228 43.9
Prupe.5G067100 Prunus persica HOM05D003894 ORTHO05D004584 1.7e-31 140.2 241 43.2
Sp2g12140 Schrenkiella parvula HOM05D003894 ORTHO05D004584 1.7e-31 140.2 246 40.2
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 3.0e-31 139.4 253 39.5
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 3.0e-31 139.4 241 41.5
MD06G1056700 Malus domestica HOM05D003894 ORTHO05D004584 3.9e-31 139.0 242 40.5
Aqoxy7G00816 Aquilegia oxysepala HOM05D003894 ORTHO05D004584 6.6e-31 138.3 230 41.3
arahy.Tifrunner.gnm1.ann1.HNG0SX Arachis hypogaea HOM05D003894 ORTHO05D004584 8.6e-31 137.9 231 40.7
CARHR223970 Cardamine hirsuta HOM05D003894 ORTHO05D004584 1.1e-30 137.5 245 39.6
Sp7g16820 Schrenkiella parvula HOM05D003894 ORTHO05D004584 1.1e-30 137.5 241 42.3
Carub.0007s2405 Capsella rubella HOM05D003894 ORTHO05D004584 1.5e-30 137.1 245 39.6
CDE02G2221 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 1.9e-30 136.7 238 37.4
PSO170G4158 Papaver somniferum HOM05D003894 ORTHO05D004584 1.9e-30 136.7 236 39.4
BcaC09g50466 Brassica carinata HOM05D003894 ORTHO05D004584 3.3e-30 136.0 241 41.1
A01p20010 Brassica napus HOM05D003894 ORTHO05D004584 3.3e-30 136.0 252 39.7
C01p25110 Brassica napus HOM05D003894 ORTHO05D004584 3.3e-30 136.0 241 41.1
BraA01t01924Z Brassica rapa HOM05D003894 ORTHO05D004584 3.3e-30 136.0 252 39.7
AL7G37350 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 4.3e-30 135.6 253 39.9
BolC1t02463H Brassica oleracea HOM05D003894 ORTHO05D004584 4.3e-30 135.6 241 41.5
Thhalv10025694m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 4.3e-30 135.6 241 41.1
Lsat_1_v5_gn_3_1181 Lactuca sativa HOM05D003894 ORTHO05D004584 4.3e-30 135.6 235 42.1
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 4.3e-30 135.6 233 41.2
arahy.Tifrunner.gnm1.ann1.31006K Arachis hypogaea HOM05D003894 ORTHO05D004584 5.6e-30 135.2 218 43.6
Aa31LG6G100 Aethionema arabicum HOM05D003894 ORTHO05D004584 9.5e-30 134.4 241 39.0
AT4G17360 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 9.5e-30 134.4 253 39.1
PSO017G7068 Papaver somniferum HOM05D003894 ORTHO05D004584 9.5e-30 134.4 232 40.5
BcaNung00098 Brassica carinata HOM05D003894 ORTHO05D004584 1.2e-29 134.0 241 41.5
ECA233G0588 Erigeron canadensis HOM05D003894 ORTHO05D004584 2.1e-29 133.3 231 39.8
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 2.1e-29 133.3 234 38.5
CAN.G1058.48 Capsicum annuum HOM05D003894 ORTHO05D004584 3.6e-29 132.5 240 38.8
DCAR_006838 Daucus carota HOM05D003894 ORTHO05D004584 4.7e-29 132.1 236 41.5
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 6.2e-29 131.7 232 40.9
Nitab4.5_0001381g0150 Nicotiana tabacum HOM05D003894 ORTHO05D004584 6.2e-29 131.7 236 39.4
Sopen08g026970 Solanum pennellii HOM05D003894 ORTHO05D004584 8.0e-29 131.3 240 38.8
Atru.chr9.1291 Acer truncatum HOM05D003894 ORTHO05D004584 1.1e-28 131.0 280 37.9
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 1.4e-28 130.6 246 39.0
Solyc08g078490.4 Solanum lycopersicum HOM05D003894 ORTHO05D004584 1.8e-28 130.2 243 38.3
Nitab4.5_0002289g0080 Nicotiana tabacum HOM05D003894 ORTHO05D004584 2.3e-28 129.8 262 36.6
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 5.2e-28 128.6 265 37.0
Nitab4.5_0001076g0020 Nicotiana tabacum HOM05D003894 ORTHO05D004584 6.8e-28 128.3 171 46.8
Ca_24586_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 8.9e-28 127.9 236 39.4
HanXRQChr08g0227781 Helianthus annuus HOM05D003894 ORTHO05D004584 8.9e-28 127.9 231 40.3
Glyma.01G208000 Glycine max HOM05D003894 ORTHO05D004584 2.0e-27 126.7 236 38.1
VMungo1215G1221 Vigna mungo HOM05D003894 ORTHO05D004584 4.4e-27 125.6 243 37.0
Zm00001eb404490 Zea mays HOM05D003894 ORTHO05D004584 5.8e-27 125.2 228 39.5
ATR0317G052 Amborella trichopoda HOM05D003894 ORTHO05D004584 7.5e-27 124.8 228 40.4
Phvul.002G057400 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 1.7e-26 123.6 241 36.5
TPR.G18144 Trifolium pratense HOM05D003894 ORTHO05D004584 8.3e-26 121.3 236 36.9
Gohir.A08G169100 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.4e-25 120.6 220 40.0
Gohir.D08G187500 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.9e-25 120.2 220 40.5
SEGI_14746 Sequoiadendron giganteum HOM05D003894 ORTHO05D004584 1.9e-25 120.2 229 38.4
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 7.8e-24 114.8 239 34.7
Os03g0102100 Oryza sativa ssp. japonica HOM05D003894 ORTHO05D004584 5.6e-22 108.6 220 38.2
ClCG10G002550 Citrullus lanatus HOM05D003894 ORTHO05D004584 3.6e-21 105.9 212 39.2
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 4.7e-21 105.5 240 34.6
Oeu024051.1 Olea europaea HOM05D003894 ORTHO05D004584 8.1e-21 104.8 59 83.1
Pp3c2_3170 Physcomitrium patens HOM05D003894 ORTHO05D004584 1.1e-20 104.4 249 34.1
Pp3c14_22020 Physcomitrium patens HOM05D003894 ORTHO05D004584 5.2e-20 102.1 233 35.2
SMO146G0337 Selaginella moellendorffii HOM05D003894 ORTHO05D004584 8.9e-20 101.3 245 32.7
Pp3c1_39510 Physcomitrium patens HOM05D003894 ORTHO05D004584 1.5e-19 100.5 233 35.2
Cfa012736 Carpinus fangiana HOM05D003894 ORTHO05D004584 2.2e-18 96.7 59 72.9
Haze_07897 Corylus avellana HOM05D003894 ORTHO05D004584 3.7e-18 95.9 56 76.8
Haze_07898 Corylus avellana HOM05D003894 ORTHO05D004584 4.9e-18 95.5 62 72.6
Psat3g203360 Pisum sativum HOM05D003894 ORTHO05D004584 1.1e-17 94.4 62 71.0
Sc22g0000940 Simmondsia chinensis HOM05D003894 ORTHO05D004584 5.4e-17 92.0 55 74.5
Gohir.D03G163400 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.2e-16 90.9 55 74.5
Lj8A264T58 Lonicera japonica HOM05D003894 ORTHO05D004584 1.6e-16 90.5 62 69.4
Potri.001G156600 Populus trichocarpa HOM05D003894 ORTHO05D004584 2.1e-16 90.1 62 69.4
CDE04G2654 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 3.5e-16 89.4 54 74.1
AUR62007102 Chenopodium quinoa HOM05D003894 ORTHO05D004584 3.5e-16 89.4 62 66.1
AUR62019965 Chenopodium quinoa HOM05D003894 ORTHO05D004584 3.5e-16 89.4 62 66.1
PGSC0003DMG401004821 Solanum tuberosum HOM05D003894 ORTHO05D004584 1.3e-15 87.4 62 67.7
Lsat_1_v5_gn_3_140581 Lactuca sativa HOM05D003894 ORTHO05D004584 2.3e-15 86.7 65 69.2
Lsat_1_v5_gn_6_98401 Lactuca sativa HOM05D003894 ORTHO05D004584 2.3e-15 86.7 65 69.2
Lsat_1_v5_gn_7_52220 Lactuca sativa HOM05D003894 ORTHO05D004584 2.3e-15 86.7 65 69.2
Lsat_1_v5_gn_8_116920 Lactuca sativa HOM05D003894 ORTHO05D004584 2.3e-15 86.7 65 69.2
Lsat_1_v5_gn_4_3501 Lactuca sativa HOM05D003894 ORTHO05D004584 3.0e-15 86.3 65 69.2
Peaxi162Scf00209g00012 Petunia axillaris HOM05D003894 ORTHO05D004584 3.9e-15 85.9 69 62.3
Lsat_1_v5_gn_1_54820 Lactuca sativa HOM05D003894 ORTHO05D004584 1.5e-14 84.0 72 61.1
Lsat_1_v5_gn_7_43960 Lactuca sativa HOM05D003894 ORTHO05D004584 1.5e-14 84.0 72 61.1
Lsat_1_v5_gn_8_19200 Lactuca sativa HOM05D003894 ORTHO05D004584 1.5e-14 84.0 72 61.1
Mapoly0048s0089 Marchantia polymorpha HOM05D003894 ORTHO05D004584 1.9e-14 83.6 62 64.5
CDE04G1229 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 4.3e-14 82.4 55 61.8
Lsat_1_v5_gn_6_107601 Lactuca sativa HOM05D003894 ORTHO05D004584 7.3e-14 81.6 62 67.7
CBR_g37463 Chara braunii HOM05D003894 ORTHO05D004584 1.2e-13 80.9 62 64.5
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 4.7e-13 79.0 62 58.1
Glyma.11G034300 Glycine max HOM05D003894 ORTHO05D004584 8.1e-13 78.2 88 48.9
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 8.1e-13 78.2 90 46.7
Glyma.11G034200 Glycine max HOM05D003894 ORTHO05D004584 3.8e-10 69.3 47 68.1
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 2.5e-06 56.6 62 43.5
PRCOL_00004292 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 3.3e-06 56.2 76 39.5


User provided reference genes

Program Settings