Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 3.7e-41 171.0 80 100.0
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 6.5e-14 80.5 42 92.9
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.4e-11 72.8 47 72.3
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.8e-11 72.4 38 92.1
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.8e-11 72.4 38 92.1
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.8e-11 72.4 42 85.7
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 86.8
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 5.2e-11 70.9 38 89.5
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 8.8e-11 70.1 38 86.8
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 8.8e-11 70.1 43 79.1
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 8.8e-11 70.1 38 86.8
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 8.8e-11 70.1 38 86.8
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 1.1e-10 69.7 38 86.8
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.1e-10 69.7 38 86.8
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.5e-10 69.3 47 70.2
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.5e-10 69.3 38 86.8
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 1.5e-10 69.3 38 86.8
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.5e-10 69.3 38 86.8
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 2.0e-10 68.9 38 84.2
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 2.0e-10 68.9 38 84.2
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 2.0e-10 68.9 38 86.8
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 2.6e-10 68.6 38 86.8
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 2.6e-10 68.6 38 84.2
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.6e-10 68.6 38 84.2
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.6e-10 68.6 38 84.2
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 3.3e-10 68.2 38 84.2
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 3.3e-10 68.2 38 84.2
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 3.3e-10 68.2 38 84.2
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 3.3e-10 68.2 38 84.2
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 3.3e-10 68.2 38 86.8
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 3.3e-10 68.2 38 84.2
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 4.4e-10 67.8 38 81.6
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 4.4e-10 67.8 38 84.2
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 4.4e-10 67.8 58 62.1
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 4.4e-10 67.8 38 86.8
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 5.7e-10 67.4 39 82.1
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 5.7e-10 67.4 38 84.2
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 5.7e-10 67.4 38 81.6
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 7.5e-10 67.0 42 76.2
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 81.6
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 81.6
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 84.2
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 84.2
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 84.2
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 84.2
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 84.2
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 84.2
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 81.6
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 81.6
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 81.6
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 81.6
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 7.5e-10 67.0 38 84.2
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 9.7e-10 66.6 38 81.6
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 9.7e-10 66.6 38 84.2
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 9.7e-10 66.6 38 81.6
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 9.7e-10 66.6 38 84.2
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 1.3e-09 66.2 38 81.6
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.3e-09 66.2 38 84.2
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.3e-09 66.2 38 84.2
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.3e-09 66.2 38 84.2
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.3e-09 66.2 38 84.2
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 1.3e-09 66.2 38 84.2
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.3e-09 66.2 46 73.9
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.3e-09 66.2 51 64.7
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.7e-09 65.9 38 84.2
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.7e-09 65.9 38 81.6
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 1.7e-09 65.9 38 81.6
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 2.2e-09 65.5 38 81.6
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 2.8e-09 65.1 38 81.6
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 2.8e-09 65.1 38 78.9
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 2.8e-09 65.1 38 78.9
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 3.7e-09 64.7 38 81.6
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 4.8e-09 64.3 38 81.6
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 4.8e-09 64.3 38 78.9
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 6.3e-09 63.9 38 78.9
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 8.2e-09 63.5 38 81.6
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.1e-08 63.2 38 81.6
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 1.1e-08 63.2 38 81.6
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.1e-08 63.2 38 78.9
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 1.1e-08 63.2 38 81.6
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.1e-08 63.2 38 78.9
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 1.1e-08 63.2 38 76.3
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 1.1e-08 63.2 38 78.9
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 1.1e-08 63.2 40 75.0
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 1.1e-08 63.2 38 81.6
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 1.1e-08 63.2 38 81.6
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 1.4e-08 62.8 38 78.9
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-08 62.4 38 76.3
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.8e-08 62.4 38 81.6
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 2.4e-08 62.0 38 78.9
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 2.4e-08 62.0 38 73.7
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 4.1e-08 61.2 38 76.3
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 4.1e-08 61.2 38 73.7
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 4.1e-08 61.2 36 80.6
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 5.3e-08 60.8 38 73.7
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 7.0e-08 60.5 38 73.7
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 9.1e-08 60.1 38 78.9
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.2e-07 59.7 38 78.9
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.6e-07 59.3 38 71.1
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 2.0e-07 58.9 38 73.7
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 7.7e-07 57.0 38 68.4
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 1.0e-06 56.6 38 71.1
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 5.0e-06 54.3 38 68.4


User provided reference genes

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