Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 9.5e-283 976.1 464 100.0
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 2.3e-204 715.7 465 69.7
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 2.7e-192 675.6 458 67.0
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 5.2e-188 661.4 457 65.2
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 8.8e-188 660.6 460 67.2
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.4e-185 653.3 458 65.3
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.8e-185 652.9 466 65.9
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.6e-184 649.8 464 64.4
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 5.9e-184 647.9 458 64.4
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.9e-182 642.9 461 63.1
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 8.9e-180 634.0 465 63.9
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 3.5e-176 622.1 462 62.8
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 4.6e-176 621.7 464 62.3
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.3e-175 620.2 475 61.7
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 3.1e-172 609.0 408 68.6
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 4.9e-170 601.7 457 61.5
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 1.4e-169 600.1 463 61.8
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.4e-169 600.1 457 61.3
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.5e-168 595.5 487 60.0
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.7e-167 593.2 461 60.5
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 6.2e-165 584.7 465 58.7
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 5.2e-164 581.6 461 60.1
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 9.8e-163 577.4 458 58.1
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.3e-162 577.0 460 58.7
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 2.4e-161 572.8 466 57.3
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.2e-160 570.5 466 57.3
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 2.1e-160 569.7 461 57.7
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 3.5e-160 568.9 461 58.1
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 5.1e-159 565.1 464 57.1
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 5.6e-158 561.6 459 58.4
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 5.2e-156 555.1 542 50.0
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.5e-155 553.5 425 58.8
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.4e-155 552.4 468 59.4
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.2e-152 543.9 463 56.2
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.0e-151 539.3 464 54.5
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 4.7e-149 531.9 462 55.4
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 8.9e-148 527.7 462 54.8
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 3.4e-147 525.8 512 50.0
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 6.4e-146 521.5 439 55.6
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 8.4e-146 521.2 462 52.8
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 7.1e-145 518.1 463 53.1
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 3.9e-143 512.3 461 51.8
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 9.0e-140 501.1 457 50.8
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 2.6e-139 499.6 463 51.2
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 6.4e-138 495.0 459 51.9
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 9.3e-137 491.1 438 54.1
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 6.0e-136 488.4 376 61.7
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 3.3e-134 482.6 463 51.2
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.2e-133 478.4 417 56.4
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 5.3e-132 475.3 469 50.5
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 3.8e-130 469.2 452 50.0
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 7.1e-129 464.9 469 50.3
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.8e-127 460.3 469 49.3
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.1e-124 451.1 472 48.9
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.9e-121 440.3 466 47.0
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.1e-120 436.8 462 47.8
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 1.0e-119 434.5 461 46.4
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.3e-119 434.1 462 47.4
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.8e-119 433.7 378 56.1
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.3e-119 433.3 462 47.4
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 4.1e-116 422.5 528 43.9
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 6.9e-116 421.8 477 44.4
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.0e-114 417.9 462 44.6
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 2.9e-114 416.4 470 45.3
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 1.2e-112 411.0 390 51.3
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.1e-112 410.2 445 47.6
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.8e-111 407.1 445 47.4
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.3e-111 406.8 462 44.6
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.1e-110 404.4 469 45.8
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 7.4e-110 401.7 382 52.1
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.8e-108 397.1 462 44.2
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 3.1e-108 396.4 462 43.9
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.4e-107 392.9 462 43.9
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 3.8e-106 389.4 442 45.7
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 3.8e-106 389.4 465 45.2
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 5.0e-106 389.0 446 44.8
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.9e-105 387.1 266 66.9
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.5e-105 386.7 467 44.5
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.1e-104 383.6 463 43.0
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 2.7e-104 383.3 356 50.3
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.1e-102 377.9 493 40.8
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.3e-102 375.9 497 40.8
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 7.4e-102 375.2 463 41.5
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 9.7e-102 374.8 463 41.5
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.1e-100 371.3 465 43.4
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.4e-100 370.2 460 43.5
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 9.1e-100 368.2 459 44.2
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.5e-99 367.5 463 41.0
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 3.4e-99 366.3 457 43.5
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 1.0e-98 364.8 458 42.6
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.3e-98 364.4 465 42.4
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.7e-98 364.0 473 41.2
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.7e-98 364.0 473 41.2
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 2.2e-98 363.6 457 42.9
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 2.9e-98 363.2 461 43.4
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 8.5e-98 361.7 459 42.5
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 1.9e-97 360.5 459 43.4
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 9.4e-97 358.2 459 43.1
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 9.4e-97 358.2 457 43.8
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.6e-96 357.5 458 41.9
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.7e-96 356.7 459 43.1
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.3e-94 349.7 480 41.9
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 9.7e-94 348.2 480 41.9
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 9.7e-94 348.2 457 42.9
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.2e-93 347.1 458 41.7
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 6.3e-93 345.5 444 40.3
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.8e-92 344.0 482 40.7
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 3.1e-92 343.2 460 40.7
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 6.5e-90 335.5 478 40.4
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.2e-89 332.8 479 40.3
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 3.6e-88 329.7 456 39.5
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.8e-87 327.4 459 41.6
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 5.2e-87 325.9 306 52.0
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 6.7e-87 325.5 425 40.2
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 6.3e-85 318.9 447 39.4
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 3.1e-84 316.6 460 38.5
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 4.5e-83 312.8 378 44.2
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 4.5e-83 312.8 311 48.2
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.3e-82 311.2 334 44.6
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 1.7e-82 310.8 460 40.9
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 3.2e-81 306.6 467 39.0
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 3.2e-81 306.6 467 39.0
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 7.2e-81 305.4 307 49.5
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 9.4e-81 305.1 469 38.8
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 1.2e-80 304.7 492 37.4
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 3.0e-79 300.1 487 36.1
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 4.0e-79 299.7 460 38.9
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 5.2e-79 299.3 460 39.1
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.5e-78 297.7 467 39.0
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 9.8e-78 295.0 256 54.7
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 9.8e-78 295.0 260 55.8
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 3.5e-75 286.6 437 36.6
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.9e-73 280.8 381 40.4
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.6e-72 277.7 319 45.1
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 1.8e-71 274.2 489 35.0
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.0e-71 273.1 453 38.4
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.0e-67 260.8 303 45.2
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.1e-65 255.0 494 31.4
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 3.3e-65 253.4 426 35.9
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.5e-62 244.6 298 44.3
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 4.1e-60 236.5 497 33.0
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.0e-58 231.9 250 44.8
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 4.9e-53 213.0 192 53.6
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 8.3e-53 212.2 356 35.1
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 2.3e-50 204.1 291 41.9
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 4.3e-49 199.9 294 37.8
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.4e-45 186.0 136 59.6
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 3.5e-43 180.3 143 59.4
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 7.3e-41 172.6 155 53.5
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.9e-36 157.9 205 41.0
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 1.3e-34 151.8 423 27.9
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.3e-29 135.2 189 38.6
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 9.6e-25 119.0 88 63.6
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 2.8e-24 117.5 330 28.5
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 4.3e-17 93.6 134 36.6
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.8e-15 88.2 117 41.0
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.8e-14 83.2 111 45.9
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 7.6e-14 82.8 149 37.6
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 4.9e-13 80.1 55 61.8
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.4e-13 79.7 84 39.3
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 2.3e-10 71.2 72 50.0
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 8.7e-10 69.3 102 41.2
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 9.6e-09 65.9 102 38.2
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.3e-08 65.5 83 42.2
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 1.4e-07 62.0 59 49.2
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 5.3e-07 60.1 65 44.6


User provided reference genes

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